Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2181 ATGACACCAGAGACGACTGAGAGTTGTCAAAAAATGAGTCTCGGTGATCAATATTCTGATGCAATTTCTTTACCTACCAATTCAATTAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGTTAATTCTTGTAACGATGGAGGCAAGCCAGTTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCACATTGCAATTACAGAGGTGTGAGGCAGAGGACATGGGGCAAATGGGTTGCAGAGATTCGTGAACCTAACAGAGGGAGTAGGCTGTGGCTTGGTACCTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGCCAGAGTGCTCGTTTGAACCTTCCTAACATTACAAACAAAGGGCAGCTAAAAGGGATTCTTTTAGAGGATTATTTGGGGCTCCGTAACTCGGATTCTTCAACTGCTTCTTCAACGTGTTCATCAACAACAACCACCTCGAACCAATCTGAGGTCTGTGTGCCTGAAGAGTTTACAGTGAGGCCACAATTTGTCCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAGTCGAAGAATGGGAATCAAGTCGATCATATTGTGATGCCAATGATGAGCTTAGAGATGCCAGTGAAACATGAAGATGCCGATGCTAAATATCACGATCAAAGCAATGATCTGGCAGTAATATCAGGAACTGAGATCCCTAGTTTGGATGAGTTGCAGAACTTTCAAATGAATGGAATGTTTGAGTCGAGGACCGGGAATCAAGCTGATCACATTGCGACGCCAATGAACTTAGAGAAGCAAGTGAAGCATGAAGATATTGAAGCTACATATCGCGATCAGAGCAATGATCAAGCATTCTTATTAGGAACTGAGTTTCCTAGTCTGGATGAGTTGCAAAACACACAAATGGATGAAATGTTTGATGTGGAGGAGCTTCTAGGCCTCATAAATGGTGATTCCATATATGATTCAAGCTTCTTGCAGGGGAATGTGAATGGTTCTAATAACATGGCGCCTTCCCAAGTTGGCAATCTTGGGTCTGAGAAACCATCAAGTTTGTCATATCAGTTCCAAAATCCCGACGCGAAGCTGCTCGGAAGTCTCCAACACATGGAGCAAGCTCCGGCCGATGTCGACTACGGATTCGACTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCTGCTGCAGATGATTGTGTTAGATACTTGAATTATGAGATGGGTGATTTGGGTTTTTGA 1332 44.82 MTPETTESCQKMSLGDQYSDAISLPTNSIRKRKSRSRRDRSTVAETLAKWKAYNECVNSCNDGGKPVRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQSARLNLPNITNKGQLKGILLEDYLGLRNSDSSTASSTCSSTTTTSNQSEVCVPEEFTVRPQFVPSNIKIEDGEGESKNGNQVDHIVMPMMSLEMPVKHEDADAKYHDQSNDLAVISGTEIPSLDELQNFQMNGMFESRTGNQADHIATPMNLEKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45738477 45740571 + Maker00039305 Lcy10g2181 645692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2181 443 CDD AP2 91 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2181 443 Gene3D AP2/ERF domain 92 150 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2181 443 SMART rav1_2 92 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2181 443 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Lcy10g2181 443 SUPERFAMILY DNA-binding domain 92 149 IPR016177 GO:0003677(InterPro)
Lcy10g2181 443 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 28 302 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Lcy10g2181 443 Pfam AP2 domain 92 141 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2181 443 MobiDBLite consensus disorder prediction 1 29 - -
Lcy10g2181 443 MobiDBLite consensus disorder prediction 1 41 - -
Lcy10g2181 443 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2181 443 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2181 443 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2181 443 MobiDBLite consensus disorder prediction 64 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2181 Lcy-Chr10:45738477 Lcy8g1467 Lcy-Chr8:41304585 1.95E-57 dispersed
Lcy10g2181 Lcy-Chr10:45738477 Lcy10g2186 Lcy-Chr10:45781550 3.88E-23 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19054 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2181 K09286 - csv:101215431 559.681