Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g2181 | ATGACACCAGAGACGACTGAGAGTTGTCAAAAAATGAGTCTCGGTGATCAATATTCTGATGCAATTTCTTTACCTACCAATTCAATTAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGTTAATTCTTGTAACGATGGAGGCAAGCCAGTTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCACATTGCAATTACAGAGGTGTGAGGCAGAGGACATGGGGCAAATGGGTTGCAGAGATTCGTGAACCTAACAGAGGGAGTAGGCTGTGGCTTGGTACCTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGCCAGAGTGCTCGTTTGAACCTTCCTAACATTACAAACAAAGGGCAGCTAAAAGGGATTCTTTTAGAGGATTATTTGGGGCTCCGTAACTCGGATTCTTCAACTGCTTCTTCAACGTGTTCATCAACAACAACCACCTCGAACCAATCTGAGGTCTGTGTGCCTGAAGAGTTTACAGTGAGGCCACAATTTGTCCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAGTCGAAGAATGGGAATCAAGTCGATCATATTGTGATGCCAATGATGAGCTTAGAGATGCCAGTGAAACATGAAGATGCCGATGCTAAATATCACGATCAAAGCAATGATCTGGCAGTAATATCAGGAACTGAGATCCCTAGTTTGGATGAGTTGCAGAACTTTCAAATGAATGGAATGTTTGAGTCGAGGACCGGGAATCAAGCTGATCACATTGCGACGCCAATGAACTTAGAGAAGCAAGTGAAGCATGAAGATATTGAAGCTACATATCGCGATCAGAGCAATGATCAAGCATTCTTATTAGGAACTGAGTTTCCTAGTCTGGATGAGTTGCAAAACACACAAATGGATGAAATGTTTGATGTGGAGGAGCTTCTAGGCCTCATAAATGGTGATTCCATATATGATTCAAGCTTCTTGCAGGGGAATGTGAATGGTTCTAATAACATGGCGCCTTCCCAAGTTGGCAATCTTGGGTCTGAGAAACCATCAAGTTTGTCATATCAGTTCCAAAATCCCGACGCGAAGCTGCTCGGAAGTCTCCAACACATGGAGCAAGCTCCGGCCGATGTCGACTACGGATTCGACTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCTGCTGCAGATGATTGTGTTAGATACTTGAATTATGAGATGGGTGATTTGGGTTTTTGA | 1332 | 44.82 | MTPETTESCQKMSLGDQYSDAISLPTNSIRKRKSRSRRDRSTVAETLAKWKAYNECVNSCNDGGKPVRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQSARLNLPNITNKGQLKGILLEDYLGLRNSDSSTASSTCSSTTTTSNQSEVCVPEEFTVRPQFVPSNIKIEDGEGESKNGNQVDHIVMPMMSLEMPVKHEDADAKYHDQSNDLAVISGTEIPSLDELQNFQMNGMFESRTGNQADHIATPMNLEKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF | 443 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 45738477 | 45740571 | + | Maker00039305 | Lcy10g2181 | 645692 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g2181 | 443 | CDD | AP2 | 91 | 150 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2181 | 443 | Gene3D | AP2/ERF domain | 92 | 150 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2181 | 443 | SMART | rav1_2 | 92 | 155 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2181 | 443 | FunFam | Ethylene-responsive transcription factor 2 | 91 | 150 | - | - | |
Lcy10g2181 | 443 | SUPERFAMILY | DNA-binding domain | 92 | 149 | IPR016177 | GO:0003677(InterPro) | |
Lcy10g2181 | 443 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 28 | 302 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Lcy10g2181 | 443 | Pfam | AP2 domain | 92 | 141 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2181 | 443 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lcy10g2181 | 443 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Lcy10g2181 | 443 | PRINTS | Ethylene responsive element binding protein signature | 93 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2181 | 443 | PRINTS | Ethylene responsive element binding protein signature | 115 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2181 | 443 | ProSiteProfiles | AP2/ERF domain profile. | 92 | 149 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2181 | 443 | MobiDBLite | consensus disorder prediction | 64 | 83 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2181 | Lcy-Chr10:45738477 | Lcy8g1467 | Lcy-Chr8:41304585 | 1.95E-57 | dispersed | |
Lcy10g2181 | Lcy-Chr10:45738477 | Lcy10g2186 | Lcy-Chr10:45781550 | 3.88E-23 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19054 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g2181 | K09286 | - | csv:101215431 | 559.681 |