Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2185 ATGAGAGGTTGCCATGAGACCCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCACTCCCACTTGCATTTTTGCCCCTTATTTCAGGTCTGACGAGCCAAAGAAATTTGCCAAAGTTCACAAAGTGTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTCAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTCAGGGATCCTGTTTATGGCTGCATCGGTGCCATTGCTTTGTTGCAGACTAAAATGGTCGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGCCTGGCTCGCTATGCTCATTCTAATCATAATCATAATAATAGTAATGGTGCTTCTTCTTGTTGCTCTTCTTCTTCTTCTTCTTCTTTGGGTGTTTTGGAGAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTATCTCTGGGCAGAATTCTTCTGATGTCTCCCAGTATGGATATTTGTGTGACTTCACTCATTTTCCTTATCCTTTTAAAGCTTGA 552 43.84 MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYAHSNHNHNNSNGASSCCSSSSSSSLGVLENCVVNMSYGGLSISGQNSSDVSQYGYLCDFTHFPYPFKA 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45770518 45771069 + Maker00039541 Lcy10g2185 645696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2185 183 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Lcy10g2185 183 Coils Coil 91 111 - -
Lcy10g2185 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 126 - -
Lcy10g2185 183 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2185 Lcy-Chr10:45770518 Lcy4g1549 Lcy-Chr4:39163632 8.29E-46 dispersed
Lcy10g2185 Lcy-Chr10:45770518 Lcy10g0181 Lcy-Chr10:2497599 9.72E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19055 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2185 - - - 0.0