Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2206 ATGGCGACGACGGAGAACACGGTTCTGCAATTTTCACAGTCTTCTAACCCTTTATCTGCCAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCTGACCGAGTGATCGGTACTCTTCTCGGCTCTGTTTTGCCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGTTGGATATTGATTATCATCACAATATGTTAATTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACGGGTGGCAGTGCTTTGATACATGAATTTTATTCCAGAGAAGTTGCAAACCCCATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGGACGATAAAAGCCTATATCTCTGTCAATTTGTCTCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAGTTCCTTTAGACCTACGAATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAGCTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGATATCTACAAATATGTTGATAATGTTGTGGTGAGTGACGTTTGGTTCTCCTCTTTTGTTATGAATCATCTTCGTTTGCTTATGTTACTACTATCTCAGGAAGGGCAAGTTAAGCCAGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCGAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTCCAGGACCATTTGCTGTTGCTGTATTTGTCGAGTATCACCAGGACACAGCTGAGCTTGGCTGAGAAGTTGAATACGGCTGCTCAGATTCTGTAA 927 42.83 MATTENTVLQFSQSSNPLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLISHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEVPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVVSDVWFSSFVMNHLRLLMLLLSQEGQVKPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45975729 45979344 + Maker00039615 Lcy10g2206 645717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2206 308 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Lcy10g2206 308 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 122 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lcy10g2206 308 Pfam Maintenance of mitochondrial structure and function 172 302 IPR024969 -
Lcy10g2206 308 CDD MPN_eIF3f 21 301 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lcy10g2206 308 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Lcy10g2206 308 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 304 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lcy10g2206 308 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lcy10g2206 308 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Lcy10g2206 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 304 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1541 Lcy-Chr1:15258836 Lcy10g2206 Lcy-Chr10:45975729 4.16E-26 wgd
Lcy10g2206 Lcy-Chr10:45975729 Lcy5g0128 Lcy-Chr5:1380958 3.33E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2206 K03249 - csv:101205957 521.546