Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g2206 | ATGGCGACGACGGAGAACACGGTTCTGCAATTTTCACAGTCTTCTAACCCTTTATCTGCCAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCTGACCGAGTGATCGGTACTCTTCTCGGCTCTGTTTTGCCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGTTGGATATTGATTATCATCACAATATGTTAATTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACGGGTGGCAGTGCTTTGATACATGAATTTTATTCCAGAGAAGTTGCAAACCCCATTCACCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGGACGATAAAAGCCTATATCTCTGTCAATTTGTCTCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAGTTCCTTTAGACCTACGAATGGTTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAGCTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGATATCTACAAATATGTTGATAATGTTGTGGTGAGTGACGTTTGGTTCTCCTCTTTTGTTATGAATCATCTTCGTTTGCTTATGTTACTACTATCTCAGGAAGGGCAAGTTAAGCCAGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCGAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTCCAGGACCATTTGCTGTTGCTGTATTTGTCGAGTATCACCAGGACACAGCTGAGCTTGGCTGAGAAGTTGAATACGGCTGCTCAGATTCTGTAA | 927 | 42.83 | MATTENTVLQFSQSSNPLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLISHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEVPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVVSDVWFSSFVMNHLRLLMLLLSQEGQVKPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 45975729 | 45979344 | + | Maker00039615 | Lcy10g2206 | 645717 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g2206 | 308 | ProSiteProfiles | MPN domain profile. | 20 | 151 | IPR037518 | - | |
Lcy10g2206 | 308 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 18 | 122 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Lcy10g2206 | 308 | Pfam | Maintenance of mitochondrial structure and function | 172 | 302 | IPR024969 | - | |
Lcy10g2206 | 308 | CDD | MPN_eIF3f | 21 | 301 | IPR027531 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Lcy10g2206 | 308 | FunFam | Eukaryotic translation initiation factor 3 subunit F | 8 | 186 | - | - | |
Lcy10g2206 | 308 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 18 | 304 | IPR027531 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Lcy10g2206 | 308 | SMART | pad1_6 | 19 | 150 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Lcy10g2206 | 308 | Gene3D | Cytidine Deaminase, domain 2 | 7 | 186 | - | - | |
Lcy10g2206 | 308 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 14 | 304 | - | GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1541 | Lcy-Chr1:15258836 | Lcy10g2206 | Lcy-Chr10:45975729 | 4.16E-26 | wgd | |
Lcy10g2206 | Lcy-Chr10:45975729 | Lcy5g0128 | Lcy-Chr5:1380958 | 3.33E-24 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g2206 | K03249 | - | csv:101205957 | 521.546 |