Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2219 ATGACGACAATCGAAAACTCCCACGTTGTTGCAATGGAGGAAGAGCAAGAAGAACGGCCTCGCCGGCTTTCTACAGCCGCCACTGACGCCTCTCCGGCTTCTGATGATGTGCGGCGGTGCTCGGGCCAGTCGAGGGCTGAGATTGTGGGGGAGGCGGCGCCGGTGCCGGAGAAAAGAAGGGGATCCTCTGTCTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAACTGGGTTGTTCTTGTAAGGAAGATTTGGCTGCTGCTCATAAGCAGTGTGCTGAGGCTTGGTTCAGGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGATTTGACAGAGCAGCGCAATGAGTCAAGCGATGCAGCGACAGCAACCGCTGCAGCCACCGTCGTGGTGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTCGCCTTTGTCATATCATGGCTATTTCACTTCAAAATACCCTCATGA 657 52.36 MTTIENSHVVAMEEEQEERPRRLSTAATDASPASDDVRRCSGQSRAEIVGEAAPVPEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKEDLAAAHKQCAEAWFRIKGDITCEICGSIAHNVTGTYEADLTEQRNESSDAATATAAATVVVPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46072880 46076410 + Maker00039271 Lcy10g2219 645730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2219 218 SUPERFAMILY RING/U-box 88 145 - -
Lcy10g2219 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 151 IPR013083 -
Lcy10g2219 218 PANTHER ZINC FINGER, RING-CH-TYPE 15 217 - -
Lcy10g2219 218 ProSiteProfiles Zinc finger RING-CH-type profile. 83 149 IPR011016 GO:0008270(InterPro)
Lcy10g2219 218 SMART ringv_2 90 143 IPR011016 GO:0008270(InterPro)
Lcy10g2219 218 MobiDBLite consensus disorder prediction 1 44 - -
Lcy10g2219 218 MobiDBLite consensus disorder prediction 10 24 - -
Lcy10g2219 218 Pfam RING-variant domain 91 142 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2219 Lcy-Chr10:46072880 Lcy1g0259 Lcy-Chr1:2338591 1.50E-18 dispersed
Lcy1g2340 Lcy-Chr1:36522417 Lcy10g2219 Lcy-Chr10:46072880 9.06E-11 transposed
Lcy1g1521 Lcy-Chr1:15002604 Lcy10g2219 Lcy-Chr10:46072880 1.94E-60 wgd
Lcy10g2219 Lcy-Chr10:46072880 Lcy11g0131 Lcy-Chr11:1417052 3.49E-52 wgd
Lcy10g2219 Lcy-Chr10:46072880 Lcy5g0151 Lcy-Chr5:1548651 8.62E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2219 - - - 0.0