Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2238 ATGGCATCAATTTCCATCCGGCTACTCCTCTTCGCGGCGGCGTTGCTCGCCGCTGCTGACACCGCAAACTCCATCACCCGATGCCCGGACTGTGGCGGCGCCGCCGTCCCCTATCCTCTGAGCACTAGCCCGACCTGTGGGGACCAATCGTACAAGATCCGGTGCGACGCAGGCTCACTAAAATTCGACACGCTCAACAACACGTACCCGATCATCTCGATCAACCCGTCGATCCAACGGCTGGTGATCCGCCCCTCTAACTTCCTCCCAAACACGTGCGTCACAGAGGATATCGCCCACGACGGAATCAAACTGAACAGCACGGCTCCCTTCAACGTGACGAGCGGGAACACGATCCTCTACTTCAACTGCACGGATTCGCTGCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGCCTGTGCCATTCGTACATCAACGGCACGAGGGGTGAGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCAGGTGGGTCGTCGAATTCGTACATGATTCGGGTGAGGGAGTCGGGTTGTAGTGCGTACACGAGCTTTGTGAACTTGAACCCGAGCTTGGGTTTACTGCAATGGCCTGAACCGGGGCTGGAGTTGCAGTGGCTGTTGCCGATGGAGCCGGTTTGTAGTACGCAGGCTGATTGTGATGGGAACGCGGCTTGTGGCGTTGATTCGAGTGGGTCTGGCTTGAGACGGTGCCTTTGTAATTCTGGGTTTGTGTGGGACCCGGTTGCTGGGGTCTGCTCTCAAAATACGTGTCATGATCCTGACGGTTGTAAGAAGTCTCACACTGCACTAATAGCCGGCCTAGTATCCGGCGTCGGCGCAGCGCTGATCATCACAACAATCGCCATCTTCCTCTACAATCGGCACAGACGAGCGAAAGAAGCTCAAGAGCGTTTAACGAGGGAGCGTGAAGCAATTCTGAACTCCAACGGCGGAGCCGGAAGGGCTGCAAAGGTCTTCACCGGCAAAGACATCAAGAGGGCCACCCACAACTTCTCCGTCGACCGCCTTCTGGGTGCCGGCGGCTACGGCGAGGTCTACAAAGGCGTTCTCGGCGACGGCACCACTGTCGCCGTCAAGTGCGCCAAGCTCGGAAACGCCAAAGGCACCGATCAAGTCCTGAATGAAGTCCGAATCCTCTGCCAAGTCAACCACCGGAGCCTTGTCCGCCTCCTCGGGTGCTGCGTCGAGTTGGAGCAGCCGATTTTGGTCTACGAGTATATCCCCAACGGCACTCTTCTCGACCATTTACAAGGTACCACTGACATGAACCTATTATCGTGGAATCAACGGCTCCAAATCGCGCAGGGCACAGCGGAGGGACTAGCATACCTTCATTTCTCAGCAGTGCCGCCAATCTACCACCGAGACGTAAAATCTAGCAACATCCTCCTAGACGAGAAGCTCAGTCCCAAAGTTTCAGATTTCGGCCTCTCTAGATTGGCCGAAACAGACCTAAGCCACATCTCAACTTGCGCACAAGGAACTCTCGGCTACCTAGATCCGGAATACTACCGCAACTACCAGTTGACAGATAAGAGCGATGTGTATAGTTTTGGAGTCGTTTTGTTGGAGTTGTTGACGTCGCAAAAGGCAATCGACTTCAACAGGGAGGCCGACGACGTGAACTTGGCGGTTTACGTGCAACGGATGGTGGAGGAGGAGAAATTAGTGGATGCCATTGATCCGAGGCTGAAGAAGGGAGCTAGTGATATGGAGATTGAGACTATGAAGGCTTTGGGGTTCTTGGCATTGGGATGCTTGGAAGAGAGGAGACAGAATAGGCCTTCCATGAAAGAAGTGGTGGAGGAGATTGAGTACATCATTAGCATTGCCTCTGCCAAGAGTTGA 1878 55.32 MASISIRLLLFAAALLAAADTANSITRCPDCGGAAVPYPLSTSPTCGDQSYKIRCDAGSLKFDTLNNTYPIISINPSIQRLVIRPSNFLPNTCVTEDIAHDGIKLNSTAPFNVTSGNTILYFNCTDSLLRSPLNCSSTSLCHSYINGTRGEAACEAAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLNPSLGLLQWPEPGLELQWLLPMEPVCSTQADCDGNAACGVDSSGSGLRRCLCNSGFVWDPVAGVCSQNTCHDPDGCKKSHTALIAGLVSGVGAALIITTIAIFLYNRHRRAKEAQERLTREREAILNSNGGAGRAAKVFTGKDIKRATHNFSVDRLLGAGGYGEVYKGVLGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDHLQGTTDMNLLSWNQRLQIAQGTAEGLAYLHFSAVPPIYHRDVKSSNILLDEKLSPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNREADDVNLAVYVQRMVEEEKLVDAIDPRLKKGASDMEIETMKALGFLALGCLEERRQNRPSMKEVVEEIEYIISIASAKS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46187843 46191612 - Maker00039691 Lcy10g2238 645749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2238 625 FunFam Wall-associated receptor kinase-like 20 417 625 - -
Lcy10g2238 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2238 625 Pfam Protein tyrosine and serine/threonine kinase 343 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2238 625 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Lcy10g2238 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Lcy10g2238 625 CDD STKc_IRAK 347 615 - -
Lcy10g2238 625 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
Lcy10g2238 625 FunFam Wall-associated receptor kinase-like 20 302 416 - -
Lcy10g2238 625 SUPERFAMILY Protein kinase-like (PK-like) 327 614 IPR011009 -
Lcy10g2238 625 SMART serkin_6 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2238 625 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 617 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lcy10g2238 625 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2238 Lcy-Chr10:46187843 Lcy9g1023 Lcy-Chr9:33684062 2.64E-88 dispersed
Lcy7g0490 Lcy-Chr7:4359456 Lcy10g2238 Lcy-Chr10:46187843 5.43E-62 dispersed
Lcy1g1044 Lcy-Chr1:9406711 Lcy10g2238 Lcy-Chr10:46187843 2.25E-88 transposed
Lcy1g1473 Lcy-Chr1:14369832 Lcy10g2238 Lcy-Chr10:46187843 3.61E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65429 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2238 - - - 0.0