Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g2240 | ATGGCCGAGATTTGCTTCCTTGGAGATGGCGAACCTTCGCCCCCGCCAGATTCCACTCGCCGGAAAATGAACTTTCTTCAGCTCAATGCTGTCGCCGATCTCACTGCTTCCTCGTCGTCGTCGGCGCCGCCGCACAACGGACGGAAACGCCGCAGAGTGTCGATGAGCTGCGAGAATCGGATGCATGAAATAGTGAAGGAAGAGATCGAGAGCGAATTAGGAGAAACAGAGGATTGGAAGAAATTGATGCAACGAAGCTTTGCGCGTATGGATGACGAAGTGGAGGAGTACAGCCATGACATCAAACAGAAAGAAAGCTCTAATATTACTTGCAGATGCGAACTCCAGACTCCTCATCAATACGACACCGTCGGATCCACCGCTCTCGTTGCCATCGTCGCGCCCGACAAATTCATCGTCTCCAACTGCGGCGACTCCCGCGCCGTTCTTTGCCGGAAAAGTGCCGTCGTTCCCCTTTCCTCCGACCATAAGCCAGATCGGCCAGACGAACTGTCCCGTATAGAATCTACGGGCGGTCGCGTGATATACTGGGATGGGGCGAGAGTGCTGGGAGTTTTAGCGACGTCGAGAGCGATAGGAGACGGTTATCTAAAACCGTACGTGATATCGGAGCCGGAGGTGGTGGAAATGGATCGGACGGCGGAGGATGAGTTCATAGTATTGGCGAGCGATGGGTTGTGGGACGTGGTTTCAAATGAAAGTGCGTGCGACGCAGTCCGAATGTGCATGCGGGCACAGCGGTCGACGTCGTCGTCGAGATATAGGGGCAGTAGCTCAGATAAAAGTTGCTCGGACGCGTCCATTGTGCTGACGAAGTTGGCAATGGCAAAGCATAGTTCAGATAACATTAGCGTGGTGGTGATAGATTTGAGAAGGGATCATCATCACTAG | 912 | 53.4 | MAEICFLGDGEPSPPPDSTRRKMNFLQLNAVADLTASSSSSAPPHNGRKRRRVSMSCENRMHEIVKEEIESELGETEDWKKLMQRSFARMDDEVEEYSHDIKQKESSNITCRCELQTPHQYDTVGSTALVAIVAPDKFIVSNCGDSRAVLCRKSAVVPLSSDHKPDRPDELSRIESTGGRVIYWDGARVLGVLATSRAIGDGYLKPYVISEPEVVEMDRTAEDEFIVLASDGLWDVVSNESACDAVRMCMRAQRSTSSSRYRGSSSDKSCSDASIVLTKLAMAKHSSDNISVVVIDLRRDHHH | 303 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 46200009 | 46201532 | - | Maker00039921 | Lcy10g2240 | 645751 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g2240 | 303 | ProSiteProfiles | PPM-type phosphatase domain profile. | 33 | 297 | IPR001932 | - | |
Lcy10g2240 | 303 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lcy10g2240 | 303 | CDD | PP2Cc | 45 | 297 | IPR001932 | - | |
Lcy10g2240 | 303 | Pfam | Protein phosphatase 2C | 47 | 290 | IPR001932 | - | |
Lcy10g2240 | 303 | SMART | PP2C_4 | 5 | 295 | IPR001932 | - | |
Lcy10g2240 | 303 | PANTHER | PROTEIN PHOSPHATASE | 47 | 296 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Lcy10g2240 | 303 | SUPERFAMILY | PP2C-like | 50 | 298 | IPR036457 | - | |
Lcy10g2240 | 303 | MobiDBLite | consensus disorder prediction | 34 | 53 | - | - | |
Lcy10g2240 | 303 | FunFam | Protein phosphatase 2C 50 | 18 | 303 | - | - | |
Lcy10g2240 | 303 | Gene3D | - | 45 | 302 | IPR036457 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2240 | Lcy-Chr10:46200009 | Lcy6g0081 | Lcy-Chr6:773112 | 2.02E-69 | dispersed | |
Lcy10g2240 | Lcy-Chr10:46200009 | Lcy11g0153 | Lcy-Chr11:1691780 | 5.26E-99 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g2240 | K14497 | - | csv:101220425 | 361.303 |