Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2240 ATGGCCGAGATTTGCTTCCTTGGAGATGGCGAACCTTCGCCCCCGCCAGATTCCACTCGCCGGAAAATGAACTTTCTTCAGCTCAATGCTGTCGCCGATCTCACTGCTTCCTCGTCGTCGTCGGCGCCGCCGCACAACGGACGGAAACGCCGCAGAGTGTCGATGAGCTGCGAGAATCGGATGCATGAAATAGTGAAGGAAGAGATCGAGAGCGAATTAGGAGAAACAGAGGATTGGAAGAAATTGATGCAACGAAGCTTTGCGCGTATGGATGACGAAGTGGAGGAGTACAGCCATGACATCAAACAGAAAGAAAGCTCTAATATTACTTGCAGATGCGAACTCCAGACTCCTCATCAATACGACACCGTCGGATCCACCGCTCTCGTTGCCATCGTCGCGCCCGACAAATTCATCGTCTCCAACTGCGGCGACTCCCGCGCCGTTCTTTGCCGGAAAAGTGCCGTCGTTCCCCTTTCCTCCGACCATAAGCCAGATCGGCCAGACGAACTGTCCCGTATAGAATCTACGGGCGGTCGCGTGATATACTGGGATGGGGCGAGAGTGCTGGGAGTTTTAGCGACGTCGAGAGCGATAGGAGACGGTTATCTAAAACCGTACGTGATATCGGAGCCGGAGGTGGTGGAAATGGATCGGACGGCGGAGGATGAGTTCATAGTATTGGCGAGCGATGGGTTGTGGGACGTGGTTTCAAATGAAAGTGCGTGCGACGCAGTCCGAATGTGCATGCGGGCACAGCGGTCGACGTCGTCGTCGAGATATAGGGGCAGTAGCTCAGATAAAAGTTGCTCGGACGCGTCCATTGTGCTGACGAAGTTGGCAATGGCAAAGCATAGTTCAGATAACATTAGCGTGGTGGTGATAGATTTGAGAAGGGATCATCATCACTAG 912 53.4 MAEICFLGDGEPSPPPDSTRRKMNFLQLNAVADLTASSSSSAPPHNGRKRRRVSMSCENRMHEIVKEEIESELGETEDWKKLMQRSFARMDDEVEEYSHDIKQKESSNITCRCELQTPHQYDTVGSTALVAIVAPDKFIVSNCGDSRAVLCRKSAVVPLSSDHKPDRPDELSRIESTGGRVIYWDGARVLGVLATSRAIGDGYLKPYVISEPEVVEMDRTAEDEFIVLASDGLWDVVSNESACDAVRMCMRAQRSTSSSRYRGSSSDKSCSDASIVLTKLAMAKHSSDNISVVVIDLRRDHHH 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46200009 46201532 - Maker00039921 Lcy10g2240 645751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2240 303 ProSiteProfiles PPM-type phosphatase domain profile. 33 297 IPR001932 -
Lcy10g2240 303 MobiDBLite consensus disorder prediction 1 20 - -
Lcy10g2240 303 CDD PP2Cc 45 297 IPR001932 -
Lcy10g2240 303 Pfam Protein phosphatase 2C 47 290 IPR001932 -
Lcy10g2240 303 SMART PP2C_4 5 295 IPR001932 -
Lcy10g2240 303 PANTHER PROTEIN PHOSPHATASE 47 296 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy10g2240 303 SUPERFAMILY PP2C-like 50 298 IPR036457 -
Lcy10g2240 303 MobiDBLite consensus disorder prediction 34 53 - -
Lcy10g2240 303 FunFam Protein phosphatase 2C 50 18 303 - -
Lcy10g2240 303 Gene3D - 45 302 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2240 Lcy-Chr10:46200009 Lcy6g0081 Lcy-Chr6:773112 2.02E-69 dispersed
Lcy10g2240 Lcy-Chr10:46200009 Lcy11g0153 Lcy-Chr11:1691780 5.26E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2240 K14497 - csv:101220425 361.303