Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g2243 | ATGGCGAATCCATGGTGGGGTGGAATTGGGAATCTTTCGATCAGGGGAGTTGATTCCTTATCTTCCTTTGATCTTAAGAACCCACAAGAACAAGACCAAGAACGACAACATCGTCAAATTGGATCTTCGAGTGACAACCCTGATTCCAACACCCGACAAGAAGAACGCGATATTAAGAATGAAGATCGGCATGGAGCTAAGAACACCAGGCGGCCACGAGGGCGGCCGCCGGGCTCAAAAAACAAGCCGAAGCCACCGATTGTCCTCACCAAAGCCACTCCCAACGCACTCCAAAGCCACGTATTCGAAATCGCCGCCGCCACCGACATCGCCCACTCCATTTCCACCTTCGCCAACCGCCGCCGCCGTGGAGTCTCCATCCTCAGCGCCACCGGCCTCGTCGCCAACGTCACTCTCCGCCAGCCCGCCGGCGCCGTCGTCACCCTCCACGAACGCTTCGAGATCCTGTCTCTCTCCGGCGCCTTCCTACCGCCGCCGTCCCCCCAGGGCGCCACTGGCTTGACCGTCTATCTCGCCGGCGGCCAGGGTAGGGTCGTCGGGGGCCTGGTCGCCGGTCCCCTCATCGCCGCAGGCCCGGTCATAGTAATTGCAGCTTCGTTCACCAACGCCATATATGAAAGATTGCCGATTGAGGAAGATGATCAGAAAGAGAATGCAAATGAGGAAATGAAAATGGAAAAGCAAGAGGAAGATCATAGTAATGGAAATAATTCAGTGGCCGGAGAATCATCGGCAGGAGGAGCTGCAGCAGCTTCTTCTTTGGCAGTTTACACTCAAATTTCTCAAGATGTGTTCTGGGCTCCTCTTCTTCCTCCTCCTCCATCTTATTAA | 852 | 55.16 | MANPWWGGIGNLSIRGVDSLSSFDLKNPQEQDQERQHRQIGSSSDNPDSNTRQEERDIKNEDRHGAKNTRRPRGRPPGSKNKPKPPIVLTKATPNALQSHVFEIAAATDIAHSISTFANRRRRGVSILSATGLVANVTLRQPAGAVVTLHERFEILSLSGAFLPPPSPQGATGLTVYLAGGQGRVVGGLVAGPLIAAGPVIVIAASFTNAIYERLPIEEDDQKENANEEMKMEKQEEDHSNGNNSVAGESSAGGAAAASSLAVYTQISQDVFWAPLLPPPPSY | 283 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 46222945 | 46223796 | + | Maker00039952 | Lcy10g2243 | 645754 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g2243 | 283 | CDD | DUF296 | 100 | 207 | IPR005175 | - | |
Lcy10g2243 | 283 | MobiDBLite | consensus disorder prediction | 23 | 89 | - | - | |
Lcy10g2243 | 283 | Coils | Coil | 218 | 238 | - | - | |
Lcy10g2243 | 283 | ProSiteProfiles | PPC domain profile profile. | 94 | 228 | IPR005175 | - | |
Lcy10g2243 | 283 | MobiDBLite | consensus disorder prediction | 218 | 240 | - | - | |
Lcy10g2243 | 283 | Gene3D | - | 98 | 236 | - | - | |
Lcy10g2243 | 283 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 36 | 250 | IPR014476 | GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy10g2243 | 283 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 99 | 208 | IPR005175 | - | |
Lcy10g2243 | 283 | MobiDBLite | consensus disorder prediction | 49 | 68 | - | - | |
Lcy10g2243 | 283 | FunFam | AT-hook motif nuclear-localized protein | 97 | 223 | - | - | |
Lcy10g2243 | 283 | PIRSF | ESCAROLA | 13 | 274 | IPR014476 | GO:0003680(InterPro) | |
Lcy10g2243 | 283 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 95 | 223 | - | - | |
Lcy10g2243 | 283 | MobiDBLite | consensus disorder prediction | 218 | 251 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2243 | Lcy-Chr10:46222945 | Lcy4g2010 | Lcy-Chr4:46595440 | 1.44E-70 | dispersed | |
Lcy10g2243 | Lcy-Chr10:46222945 | Lcy7g0904 | Lcy-Chr7:9115055 | 6.82E-70 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g2243 | - | - | - | 0.0 |