Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2243 ATGGCGAATCCATGGTGGGGTGGAATTGGGAATCTTTCGATCAGGGGAGTTGATTCCTTATCTTCCTTTGATCTTAAGAACCCACAAGAACAAGACCAAGAACGACAACATCGTCAAATTGGATCTTCGAGTGACAACCCTGATTCCAACACCCGACAAGAAGAACGCGATATTAAGAATGAAGATCGGCATGGAGCTAAGAACACCAGGCGGCCACGAGGGCGGCCGCCGGGCTCAAAAAACAAGCCGAAGCCACCGATTGTCCTCACCAAAGCCACTCCCAACGCACTCCAAAGCCACGTATTCGAAATCGCCGCCGCCACCGACATCGCCCACTCCATTTCCACCTTCGCCAACCGCCGCCGCCGTGGAGTCTCCATCCTCAGCGCCACCGGCCTCGTCGCCAACGTCACTCTCCGCCAGCCCGCCGGCGCCGTCGTCACCCTCCACGAACGCTTCGAGATCCTGTCTCTCTCCGGCGCCTTCCTACCGCCGCCGTCCCCCCAGGGCGCCACTGGCTTGACCGTCTATCTCGCCGGCGGCCAGGGTAGGGTCGTCGGGGGCCTGGTCGCCGGTCCCCTCATCGCCGCAGGCCCGGTCATAGTAATTGCAGCTTCGTTCACCAACGCCATATATGAAAGATTGCCGATTGAGGAAGATGATCAGAAAGAGAATGCAAATGAGGAAATGAAAATGGAAAAGCAAGAGGAAGATCATAGTAATGGAAATAATTCAGTGGCCGGAGAATCATCGGCAGGAGGAGCTGCAGCAGCTTCTTCTTTGGCAGTTTACACTCAAATTTCTCAAGATGTGTTCTGGGCTCCTCTTCTTCCTCCTCCTCCATCTTATTAA 852 55.16 MANPWWGGIGNLSIRGVDSLSSFDLKNPQEQDQERQHRQIGSSSDNPDSNTRQEERDIKNEDRHGAKNTRRPRGRPPGSKNKPKPPIVLTKATPNALQSHVFEIAAATDIAHSISTFANRRRRGVSILSATGLVANVTLRQPAGAVVTLHERFEILSLSGAFLPPPSPQGATGLTVYLAGGQGRVVGGLVAGPLIAAGPVIVIAASFTNAIYERLPIEEDDQKENANEEMKMEKQEEDHSNGNNSVAGESSAGGAAAASSLAVYTQISQDVFWAPLLPPPPSY 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46222945 46223796 + Maker00039952 Lcy10g2243 645754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2243 283 CDD DUF296 100 207 IPR005175 -
Lcy10g2243 283 MobiDBLite consensus disorder prediction 23 89 - -
Lcy10g2243 283 Coils Coil 218 238 - -
Lcy10g2243 283 ProSiteProfiles PPC domain profile profile. 94 228 IPR005175 -
Lcy10g2243 283 MobiDBLite consensus disorder prediction 218 240 - -
Lcy10g2243 283 Gene3D - 98 236 - -
Lcy10g2243 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 250 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy10g2243 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 208 IPR005175 -
Lcy10g2243 283 MobiDBLite consensus disorder prediction 49 68 - -
Lcy10g2243 283 FunFam AT-hook motif nuclear-localized protein 97 223 - -
Lcy10g2243 283 PIRSF ESCAROLA 13 274 IPR014476 GO:0003680(InterPro)
Lcy10g2243 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 223 - -
Lcy10g2243 283 MobiDBLite consensus disorder prediction 218 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2243 Lcy-Chr10:46222945 Lcy4g2010 Lcy-Chr4:46595440 1.44E-70 dispersed
Lcy10g2243 Lcy-Chr10:46222945 Lcy7g0904 Lcy-Chr7:9115055 6.82E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2243 - - - 0.0