Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2248 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTATACCCGAACGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCGAACTCTCTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTATGCCACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCTATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGGGAATTCGATGATTTAGACTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACAACACCTTCTATGAGTGATGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGTGACCCCGCTGTGAATCAACAGGCCTCATCTTCAGAATCTAATGAGAAGAGACCAGATTCAGTTAATGCAGTTGGCGGTACTAAGACCTCAGAGGATGAACTTACATGTAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTGATACGTAGTTTACCATGTTTGCATCAGTTCCATGCCAACTGCATAGACCCATGGCTGCGGCAGCAGGGAACGTGCCCGGTTTGTAAATTCCGTGCGGTGTCTGGGTGGTCAGAACAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA 828 44.93 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSDEQINALPVHKYKVSGPQSDPAVNQQASSSESNEKRPDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46254690 46258593 + Maker00039646 Lcy10g2248 645759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2248 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Lcy10g2248 275 MobiDBLite consensus disorder prediction 174 206 - -
Lcy10g2248 275 MobiDBLite consensus disorder prediction 177 206 - -
Lcy10g2248 275 CDD RING-H2_PA-TM-RING 213 255 - -
Lcy10g2248 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 259 IPR013083 -
Lcy10g2248 275 SUPERFAMILY RING/U-box 208 262 - -
Lcy10g2248 275 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lcy10g2248 275 Pfam Ring finger domain 213 255 IPR001841 -
Lcy10g2248 275 SMART ring_2 214 254 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2248 Lcy-Chr10:46254690 Lcy6g2328 Lcy-Chr6:48076476 4.77E-11 dispersed
Lcy10g2248 Lcy-Chr10:46254690 Lcy5g0512 Lcy-Chr5:5649087 7.68E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2248 K16283 - csv:101216306 496.123