Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2277 ATGGAGGAAAATTCAAGCCTTGTCGTAGAATCAACTCTCACAAACGCCATGGAAGCAGAGCCTCAAGAAGAAGACAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGCAGAACGCTTTCTTCCAGTCCTCTCGCCATTGTTGGAGCCAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGTACATAATGGGGTTCGTCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACTGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAATATGTTCGGCGCCACGACGTTGATCGTTAAGATCATTGGGAGCATTGGAGCAGTGGCTGCAGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTTGGGCAAGGCGGGCCGGACAACTATCGAGTCAAGTGGACGTGGCTACGCTATTTCAACAACGATCGGGATCGTCGGGATCTCATCACTTGCGGGGCGTCGTCGGGGGTTTGTGCAGCGTTCCGAGCTCCGGTCGGGGGTGTTCTATTTGCTCTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCCTTGCTGTGGAGGACCTTTTTTAGCACAGCCATTGTTGTGGTGGTGCTGAGGACTTTCATTGAAATATGCAAGGCAGGGGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATAATGTTTGATGTCAGTGGTGTTTCTGTTAGTTACCATATAATGGACATTATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAACCATCTTTTGCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAGGGAAGAATGCACAAGCTGTTACTGAGCTTAGGAGTTTCACTCTTCACTTCAATCTGCCAATACAGTCTCCCTTACCTTGTCCAATGCACCCCCTGCAACCCTGAACTTTCAGATTCCGCCTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCGAAAGGCCATTACAACGACCTCGCTACCCTTCTCCTCACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAACACTCCCGCCGAGTACCAGCCCCTTTCCCTCGTCATCTTCTTCCTTCTCTACTGCGTTTTAGGCCTAATCACCTTCGGCATCGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATCTTGATGGGCTCCGGCTATGGCCGCCTCATCGGCCTCCTCATGCGGCCCTACACCAATCTCGATCAGGGACTCTTGGCTGTTCTCGGTGCTGCCTCGTTGATGTCCGGCTCCATGAGGATGACGGTTTCGCTCTGTGTTATATTCCTCGAACTCACCAACAATCTCCTCCTGCTTCCGATTACCATGATTGTCCTTCTGATTGCCAAAACCGTCGGGGACAGTTTTAACCCTAGTATTTACGAGATCATCCTGCATTTGAAGGGGCTTCCGTTCTTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTCGGGGAGCTCGCCGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGACTGGAGAAAGTGTCTCGGATCGTGGAGGTTCTTAAGAACACTACGCATAACGGGTTCCCTGTCGTGGACGCCGATTCGGTGGTGCCGCCGGTGGGGATGGCGGTCGGCGCGACGGAGCTGCATGGGCTGGTGTTGAGAGCGCATTTGCTGCAGGTGCTGAAGAAGAAATGGTTCTTGAGAGAGAGGCGGAGGACGGAGGAATGGGAGGTGAGGGAGAAATTTTCATGGGTGGAATTGGCGGAGAGGGAAGGGAAGATCGAGGAGCTTGCAGTGACGAAGGAGGAGATGGAGATGTACGTTGATCTTCATCCTCTTACTAACACCACGCCTTACACAGTAATGGAGAGCATGTCGGTGGCGAAAGCTCTGGTTCTGTTCAGGCAAGTGGGGCTCCGCCATTTGCTCATCGTGCCCAAGTATGAAGCAGCTGGGGTTCCGCCTGTAATTGGGATTTTGACGAGGCAAGATTTAAGGCCATACAACATTCTGAGTGCATTTCCTCATCTGGCCAGAATCAAGGGCAATGAGAAAGGGAACTGA 2169 51.91 MEENSSLVVESTLTNAMEAEPQEEDRDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEYIMGFVYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGRMHKLLLSLGVSLFTSICQYSLPYLVQCTPCNPELSDSACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTPAEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLKNTTHNGFPVVDADSVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLRERRRTEEWEVREKFSWVELAEREGKIEELAVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLARIKGNEKGN 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46461574 46465891 - Maker00039535 Lcy10g2277 645788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2277 722 Gene3D - 535 702 IPR046342 -
Lcy10g2277 722 SUPERFAMILY CBS-domain pair 519 701 IPR046342 -
Lcy10g2277 722 ProSiteProfiles CBS domain profile. 649 714 IPR000644 -
Lcy10g2277 722 Gene3D Clc chloride channel 47 517 - -
Lcy10g2277 722 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 51 702 IPR051280 GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER)
Lcy10g2277 722 Pfam Voltage gated chloride channel 81 495 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 SUPERFAMILY Clc chloride channel 60 517 IPR014743 -
Lcy10g2277 722 MobiDBLite consensus disorder prediction 1 18 - -
Lcy10g2277 722 PRINTS Chloride channel signature 124 143 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 PRINTS Chloride channel signature 464 483 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 PRINTS Chloride channel signature 93 110 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 PRINTS Chloride channel signature 446 462 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 PRINTS Chloride channel signature 414 434 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 PRINTS Chloride channel signature 188 207 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 PRINTS Chloride channel signature 502 516 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy10g2277 722 PRINTS Plant CLC chloride channel signature 223 233 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy10g2277 722 PRINTS Plant CLC chloride channel signature 366 382 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy10g2277 722 PRINTS Plant CLC chloride channel signature 209 217 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy10g2277 722 PRINTS Plant CLC chloride channel signature 241 248 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy10g2277 722 CDD CBS_pair_voltage-gated_CLC_euk_bac 535 703 - -
Lcy10g2277 722 SMART cbs_1 652 705 IPR000644 -
Lcy10g2277 722 SMART cbs_1 537 597 IPR000644 -
Lcy10g2277 722 MobiDBLite consensus disorder prediction 1 35 - -
Lcy10g2277 722 Pfam CBS domain 650 701 IPR000644 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2277 Lcy-Chr10:46461574 Lcy6g1146 Lcy-Chr6:13162333 4.64E-246 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2277 K05016 - csv:101210008 1241.87