Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2284 ATGGCAGCCATGGCAATGCGAGTGGTGCTGTTTTTGGCTCTCGTCTGTGTACTCATGGGGCTCGGCCAGGGCCAGCTACGGCCGAACTTCTACAATTCGACGTGCCCAAATGTCGAACAAATCGTTCGCCAGGCCGTTAGCCTAAAGTTTAGCCAAACTTTCGTTACCGTTCCTGCAACTTTGAGATTGTTCTTCCATGACTGCTTTGTTTCGGGATGTGATGCTTCAGTTATGATAGCGTCGGCGAGTGGCGACGCCGAGAAGGACGCAGAAGACAATCAGTCACTGGCGGGAGATGGGTTTGACACAGTGATTAAGGCGAAGCAGGCGGTGGAAGCTCAGTGTCCTGGAATAGTTTCCTGTGCTGATATCATGGCTGTCGCGGCTAGGGACGTCGTCGTTCTGGCCGGAGGCCCAAGTTTCTCGGTCGAACTAGGACGCCGAGACGGGCTAATCTCCAACGCGTCGCTAGTAGTCGGAAAGTTACCAGGACCAAGCTTCAACCTGACCCAACTAAACGCCATGTTCGCCAAAAACAACCTAACCCAGACCGACATGATCGCCTTATCCGGCGCCCACACGGTCGGCTTCTCCCACTGCAGCCGCTTCGCCAACCGCCTCTACTCCTTCTCCCCGACCTCCCCAGTCGACCCATCGCTCGACCCAGCCTACGCCAAACAGCTCATGAAAGCTTGCCCTCAGGACGTGGACCCCAGAGTTGCCGTGGACATGGACCCTGTGTCTCCACGGAAATTCGACAACGCTTATTACCAGAACCTGGTGAACCACAAGGGGCTTTTCACGTCGGATGAGGTGCTGTTCACGGACCCCTTGTCGCAGCCCACCGTCAGTGGCTTCGCCGGTGATCGGACTGGGTTCAATAGAGCGTTTGCGGCGGCTATGGTTCGGCTTGGGAGAGTGGGCGTTAAGACTGGGGGTTTGGGTGCAAGGAAGGGGATGATTCTTGCAATCAGATCACGCGATGGATTTGTTAATGTGTCGTTTTCATCTCTAGCTTGCAAGAGAACGATGGGGGCAGTATCACGAACAATTGTCTCCCAAGATAGGACGGATTACCCACCTATGAATGTAGTACTCCAATCACCGGACTCTCGAACACTGGGATGCGATGCTTCAGTGATGATCTCATCGCCGAGCGGAGACGCCGAGAAGGACGCTCAAGATAATCTCTCCCTCGCCGGAGACGGCTTCGACACCGTCGTCAAGGCCAAGCAGGCCGTCGAAGCCGCCTGCCCCGGCCGAGTCTCTTGTGCCGATATATTGGCTCTCGCCGCCCGAGACGCCGTCGTCCTCGCCGGAGGCCCAAATTTCAACGTCGAATTAGGACGCCGCGACGGCCTCATCTCCAAAGCCTCACGCGTCGACGGCAATTTACCGTCCCCAAATTTCGATCTGAACGCACTGACTTCCATCTTCGCCAAAAACGGACTCTCTCAAACCGACATGATCGCTCTCTCCGGCGCGCACACCATCGGCGCGTCCCACTGCAACCGCTTCGCCGACCGGCTCTTCTCCTCCTCAGGCGTAGACCCGTCGCTAAATCCGGCGTACGCAGAGCAACTGAAACAATCGTGCCCTCGGAATGTTGACCCAAGCGTGGTCGTGCAGCTAGATCCGACGACTCCGAACACGTTCGACAACGTGTATTACCGGAATTTGGTGGACGGCAAAGGGCTGTTCAGATCGGATGAGGTTCTGTTCACGAGCTCGGCGTCGAAGGCGACGGTGGTGGGATTTGCGAACAACGGAGGGCAGTTCAATGCGGCGTTTGTGGCGGCGATGAGGAAGCTGGGGAGAGTCGGAGTTAAGACGGGGAGCGCTGGAGAGATAAGGAGAGACTGTAGTGCGTTTAATTGA 1878 56.44 MAAMAMRVVLFLALVCVLMGLGQGQLRPNFYNSTCPNVEQIVRQAVSLKFSQTFVTVPATLRLFFHDCFVSGCDASVMIASASGDAEKDAEDNQSLAGDGFDTVIKAKQAVEAQCPGIVSCADIMAVAARDVVVLAGGPSFSVELGRRDGLISNASLVVGKLPGPSFNLTQLNAMFAKNNLTQTDMIALSGAHTVGFSHCSRFANRLYSFSPTSPVDPSLDPAYAKQLMKACPQDVDPRVAVDMDPVSPRKFDNAYYQNLVNHKGLFTSDEVLFTDPLSQPTVSGFAGDRTGFNRAFAAAMVRLGRVGVKTGGLGARKGMILAIRSRDGFVNVSFSSLACKRTMGAVSRTIVSQDRTDYPPMNVVLQSPDSRTLGCDASVMISSPSGDAEKDAQDNLSLAGDGFDTVVKAKQAVEAACPGRVSCADILALAARDAVVLAGGPNFNVELGRRDGLISKASRVDGNLPSPNFDLNALTSIFAKNGLSQTDMIALSGAHTIGASHCNRFADRLFSSSGVDPSLNPAYAEQLKQSCPRNVDPSVVVQLDPTTPNTFDNVYYRNLVDGKGLFRSDEVLFTSSASKATVVGFANNGGQFNAAFVAAMRKLGRVGVKTGSAGEIRRDCSAFN 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46501782 46511657 + Maker00039543 Lcy10g2284 645795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2284 625 CDD secretory_peroxidase 25 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy10g2284 625 Gene3D - 29 315 - -
Lcy10g2284 625 FunFam Peroxidase 466 604 - -
Lcy10g2284 625 SUPERFAMILY Heme-dependent peroxidases 25 315 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 ProSiteProfiles Plant heme peroxidase family profile. 370 625 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PANTHER - 12 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lcy10g2284 625 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 ProSitePatterns Peroxidases proximal heme-ligand signature. 488 498 IPR019793 -
Lcy10g2284 625 ProSiteProfiles Plant heme peroxidase family profile. 25 332 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 Gene3D Peroxidase, domain 2 466 604 - -
Lcy10g2284 625 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Lcy10g2284 625 Gene3D - 357 625 - -
Lcy10g2284 625 PRINTS Haem peroxidase superfamily signature 545 560 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 FunFam Peroxidase 163 304 - -
Lcy10g2284 625 FunFam Peroxidase 29 169 - -
Lcy10g2284 625 Gene3D Peroxidase, domain 2 163 304 - -
Lcy10g2284 625 SUPERFAMILY Heme-dependent peroxidases 353 625 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 Pfam Peroxidase 42 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 Pfam Peroxidase 364 589 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2284 625 CDD secretory_peroxidase 375 624 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2284 Lcy-Chr10:46501782 Lcy10g2286 Lcy-Chr10:46518921 2.57E-140 dispersed
Lcy8g1863 Lcy-Chr8:44931292 Lcy10g2284 Lcy-Chr10:46501782 1.15E-11 dispersed
Lcy9g1913 Lcy-Chr9:44127211 Lcy10g2284 Lcy-Chr10:46501782 8.37E-47 dispersed
Lcy10g2284 Lcy-Chr10:46501782 Lcy10g2285 Lcy-Chr10:46514000 6.28E-145 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2284 K00430 - csv:101213098 525.783