Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2285 ATGTATGGAATTGAAGAAGAGCAAAAAAAAACTTCAAAAATGGGATCTTTTTGGAGGGCTTTGGTTTTGGCTGTGGTTCTTGCAGCTTTGGTGGAGAGAAGAGAGGCTCAATTAGTAGAGAATTTCTACGCCTCAACTTGTCCGAACGTCGAGCAAATAGTTAGACAATCTGTTCAAAACAAGTTTGCTCAAACGTTCGTCACCATCCCTGCAACTTTGCGACTCTTCTTCCACGATTGTTTTGTTGAGGGATGTGATGCTTCTGTGATGATAGCATCTCCAAATGGAGACGCAGAGAAAGACGCTCAAGACAACATTTCATTAGCAGGAGATGGATTCGACACTGTTGTAAAAGCAAAACAAGCTGTAGAAACTGCTTGTCCTGGTGTTGTCTCTTGTGCAGACATCTTAGCTCTTGCAACTAGGGACGTCGTTACCTTGGCGGGAGGCCCACAATATAGCGTGGAACTAGGCCGTCGAGATGGGCTCATTTCTCAAGCATCCCGAGTGGCCGGAAACCTACCGGAACCATTCTTCAACCTGAACCAACTGGTCACCATGTTCGCCTCCCACGGCCTGAGCCTCATCGACATGATCGCCCTCTCCGGAGCGGGCCACACCCTCGGCTTCTCCCACTGCGACCGCTTCGCCAACCGCCTCTACTCCTTTTCGCCTTCGTCTCCGGTGGACCCGTCGTTGGACCCCGGGTACGCCCGACAGCTGATGGATGTGTGTCCGCAGAACGTGGATCCGAGCGTGGCCATCAACATGGATCCTATAACCCCTCAAACCTTCGACAACGTTTACTACCAGAACCTGGTCGCCGGCAAGGGGCTGTTCAGTTCCGACCAGGTTCTGTTCACGGAGTCGCAATCGCAGCCGACGGTCCGCAGCTTCGCCACCAATGGGGCGGAGTTTAATGCGGCGTTTATCACGGCCATCACGAAGCTGGGTCGAGTGGGTGTTAAGACTGGTACAGATGGTGAAATTCGAAGGGATTGCACTGCCTTTAATTCCTAA 1020 51.57 MYGIEEEQKKTSKMGSFWRALVLAVVLAALVERREAQLVENFYASTCPNVEQIVRQSVQNKFAQTFVTIPATLRLFFHDCFVEGCDASVMIASPNGDAEKDAQDNISLAGDGFDTVVKAKQAVETACPGVVSCADILALATRDVVTLAGGPQYSVELGRRDGLISQASRVAGNLPEPFFNLNQLVTMFASHGLSLIDMIALSGAGHTLGFSHCDRFANRLYSFSPSSPVDPSLDPGYARQLMDVCPQNVDPSVAINMDPITPQTFDNVYYQNLVAGKGLFSSDQVLFTESQSQPTVRSFATNGAEFNAAFITAITKLGRVGVKTGTDGEIRRDCTAFNS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46514000 46516370 + Maker00039854 Lcy10g2285 645796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2285 339 Gene3D Peroxidase, domain 2 175 317 - -
Lcy10g2285 339 Gene3D - 41 338 - -
Lcy10g2285 339 PANTHER - 23 338 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 CDD secretory_peroxidase 37 337 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy10g2285 339 PRINTS Haem peroxidase superfamily signature 131 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Haem peroxidase superfamily signature 198 213 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Haem peroxidase superfamily signature 69 83 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Haem peroxidase superfamily signature 258 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Haem peroxidase superfamily signature 149 161 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 FunFam Peroxidase 175 317 - -
Lcy10g2285 339 ProSiteProfiles Plant heme peroxidase family profile. 37 338 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 FunFam Peroxidase 41 181 - -
Lcy10g2285 339 PRINTS Plant peroxidase signature 196 208 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 71 91 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 256 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 47 66 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 111 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 312 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 272 289 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 130 140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 PRINTS Plant peroxidase signature 149 164 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 Pfam Peroxidase 54 302 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2285 339 SUPERFAMILY Heme-dependent peroxidases 37 338 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2285 Lcy-Chr10:46514000 Lcy1g0927 Lcy-Chr1:8088146 1.37E-140 dispersed
Lcy10g2284 Lcy-Chr10:46501782 Lcy10g2285 Lcy-Chr10:46514000 6.28E-145 tandem
Lcy10g2285 Lcy-Chr10:46514000 Lcy10g2286 Lcy-Chr10:46518921 1.15E-194 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2285 K00430 - csv:101213580 550.051