Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2286 ATGGGATTTTTTTGGAGGGCTTTGGTTTTGGTTGTGATTTTAGCGACGACGGTGGAGAGGGGAGAGGCCAAATTAGCAAAGAACTTTTATGTTCGAAGTTGTCCAAACGTGGAGCAAATAGTTAGACAATCTGTTCAAAAAAAGCTTTCTGAGACATTCGTTACTATCCCTGCAACTTTGAGACTCTTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCTTCAGTGTTGATAGCGTCACCAGATGGGGATGCAGAGAAGGATGCTCCAGACAACATTTCATTAGCAGGAGATGGTTTTGACACCATTGTTAGAGCAAAACAAGCTGTTGAAGCTGTTTGTCCTGGTGTTGTCTCTTGTGCTGACATATTGACTCTCGCAACTAGGGATGTCGTTTCCTTGGCTGGAGGCCCACAATACAGCGTGGAACTGGGCCGCCGAGATGGGCTCATTTCCCAAGCATCCCGAGTCGCCGGAAACCTACCGGAGCCATTCTTCAATCTGAACCAACTGATCACCATGTTCGCCGCCCACAACCTGACCCTCCTCGACATCATCGCCCTCTCCGGAGCCCACACCCTCGGCTTCTCCCACTGCGACCGCTTCTCCAACCGCCTCTACTCCTTTTCCCCGTCGTCTCCGGTGGACCCCTCGCTCGACCCGACTTACGCCCAACAGCTGATGCTGGCTTGTCCGCCGAACCCGCAGCCCGGCGTAATCGTCAACATGGATCCTGTGACCCCCAACACCTTCGACAACGTTTACTACCAGAACCTCGTCGCCGGCAAGGGCCTGTTCACCGCCGACCAGATTCTGTTCACGGAGTCGAGATCGCGGCCGACGGTCCGTAGATTTGCGAAGAATGGGGGGAGGTTTAATAAGGCGTTTATCAGGGCGATGACGAAGCTGGGTCGGGTCGGGGTTAAGACCGGCAGGAAGGGTGAAATTCGAAGGGATTGCACTGTCTTTAATCAGTAA 978 52.66 MGFFWRALVLVVILATTVERGEAKLAKNFYVRSCPNVEQIVRQSVQKKLSETFVTIPATLRLFFHDCFVEGCDASVLIASPDGDAEKDAPDNISLAGDGFDTIVRAKQAVEAVCPGVVSCADILTLATRDVVSLAGGPQYSVELGRRDGLISQASRVAGNLPEPFFNLNQLITMFAAHNLTLLDIIALSGAHTLGFSHCDRFSNRLYSFSPSSPVDPSLDPTYAQQLMLACPPNPQPGVIVNMDPVTPNTFDNVYYQNLVAGKGLFTADQILFTESRSRPTVRRFAKNGGRFNKAFIRAMTKLGRVGVKTGRKGEIRRDCTVFNQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46518921 46522258 + Maker00039275 Lcy10g2286 645797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2286 325 FunFam Peroxidase 28 167 - -
Lcy10g2286 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 Gene3D Peroxidase, domain 2 162 303 - -
Lcy10g2286 325 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 Pfam Peroxidase 41 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy10g2286 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Lcy10g2286 325 FunFam Peroxidase 162 303 - -
Lcy10g2286 325 SUPERFAMILY Heme-dependent peroxidases 25 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 Gene3D - 28 324 - -
Lcy10g2286 325 PANTHER - 10 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy10g2286 325 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2284 Lcy-Chr10:46501782 Lcy10g2286 Lcy-Chr10:46518921 2.57E-140 dispersed
Lcy10g2286 Lcy-Chr10:46518921 Lcy1g0927 Lcy-Chr1:8088146 4.26E-143 dispersed
Lcy10g2285 Lcy-Chr10:46514000 Lcy10g2286 Lcy-Chr10:46518921 1.15E-194 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2286 K00430 - csv:101213580 516.538