Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2287 ATGTCTACAGAGAATCCTCCTCCGTCGCCGCCGGCGCCATCGTCGAAGCCGCTAGCTCTGGACGTTCCGCTACAGGCTCTCGGATTCGAGGTCGAACACGCATCTTCTCAGAGAGTGAGCGGCCGTCTTCTCGTTTCCCCAAATTGCTGCCAGGAATTCGGAGGCGTTTCGGGACAAATCAAGCGGAATCGGGGCGGCCAGAGGCAGCAGGGGCCAAACGGAGGCGACCGAGCTACGGGCCAAGGCCGAGGCCGACCATATGGGTCCGCCCAAGTTGGCCCGACCCTTTGGTCTGGTCTTCCTCTGGGTCGGTTTCCTGATCCTATCTCTGTCCGGTTGTCATCGTCAGCTCCTTGTGCATCAGAGTGTTTTGATATGAAACTCGAGGACCGAAAATGGACTCCGAAGACGAAACTAGCAAAAAGGTCGGAGGGACCAAGCCTTGGCCCGACCCCTGCTCAGCCTCAACCTTGGGCCGAGGCCGAGGCCCATGGTTGGCCTCGGCCAGACCCTGCTCGGGCCGAGGTCTTCCGTCTCCGTTTGGTTCGAGGTGCCCCGATTCCACGTGATTCAGTCATGGATCGCCTTCGAACGCTTGAAAACCTAGAGCATTTAAACCCGGATCCCGAAACTCATTCCTTGGACTCTTTCCTCTTACTTTGCTCTTTTGCTCTCCACCTTCAGCTTTCTGACTTAAGCATCGGAGGCGGTGTGGCAAGCACCACACCGGTGTGCAGACGGGCGCTCAATCGGACAGAGTTTGGGTTCTGGGCATTCATGGGTCGGTGCAATGAGAAACTCGTGGCCTTTTTGAACAATCGGTGGCTGGTTTTTGTGGCTGCAATATGGGTTCAGTCTTGCGCTGGAATTGGCTATCTTTTCGGGAGCATATCGCCGGTCATCAAGACGAATTTGAGTTACAACCAGAGGCAAATTGCCCGGCTCGGTGTCGCCAAGGACCTTGGCGACAGCGTCGGCGTTTTGGCCGGAACTCTGTCGGAGATATTGCCCTTTTGGGGAACTCTGTTGGTCGGTGCTCTCAATAATTTTGTTGGGTATGGTTGGCTTTGGCTCATCGTCACTGGGCGAGCTCCGGTTTTGCCTCTCTGGGCCCGCATCTGGGTGTGGGGGGATGATCTTTTCCTTGCAAATCTAATTGATGATGGTCCAGAATCAATCCTAGCCTGTGCATTAGGATTGATGTGCGTTCTTGTATTTGTGGGAACGAATGGGGAGACGTACTTCAATACAGTTTCTCTGGTTTCTTGCGTACAAAACTTTCCGAAAAGCAGGGGTCCGGTGGTCGGGATTCTGAAAGGCTTTGCTGGTTTAAGTGGTGCAATTTTGACTCAGATATATGCAATCATGCATTCTCCTGATTCAGCCAATCTTATATTCATGATAGCAGTAGGTCCTGCAATGGTGGCTATTGGTATGATGTTTTTTATCAGACCTGTTGCGGGTCATCGACAAATAAGACCGTCCGATGGCATGAGCTTTACTAGTGTTTATGGTGTCTGCCTCCTTTTGGCTGCATACTTGATGGGAGTCATGCTTATTGAGGATCTTGTTACCTTGAACCCCACTGTGATAGCCATTTTTACTGCAGTCATGTTTGTCATTCTTCTTACTCCCTTTTTGATTCCTGTTACATTGACTCTTAGCTCGGAGACGACAACATTCCCTGAGCAAGAAGCTCTCCTACAACAGTCACCGAAACAGGAACCTGCCAGATCTGAAACAGATGGTAATGAAGTGATATTTAGTGAGGTTGAAGACGAAAAATCCGAGGGAGAGGACTTACTTCCTGCATTAGAGAGACAAAAGCGCATTGCTCAGTTGCAAACAAGACTATTGCAAGCAGCTGCAGAAGGAGCAGTAAGAGTGAAGAGGAGGAAGGGTCCACGTAGAGGGGAAGATTTCACTTTGGGTCAAGCTTTAATCAAAGCAGACTTTTGGCTTATATTTTTCTCCCTTCTCCTTGGTTCTGGAACCGGATTGACCGTGATCGATAACCTCGGACAGATGAGCCAGTCTTTAGGTTACGATAACACACATATTTTTGTATCCATGATAAGCATATGGAACTTTCTCGGCCGTGTCGGTGGCGGATACTTCTCCGAGATCGTTGTGAGAGATTATGCTTATCCAAGGCCCATTGCAATGGCGACTGCGCAATTCCTTATGATATTTGGACATGTCTTCATCGGTATGGGATGGCCTGGGGCAATGTACATCGGTACTCTGATAACGGGGCTCGGGTACGGGGCTCACTGGGCTATCGTGCCTGCTACCGCCTCTGAATTGTTTGGTTTGAAAAAGTTTGGGGCTTTGTACAACTTCCTGACCCTCTCAACTCCTATGGGATCTCTGATATTTTCTGGCTTGATAGCGAGCAGTATATACGATAGTGAAGCAGAGAAGCAAGCTCATAATCATAATCATCTCTCACAGCTGCAGAGCTCCTCATCAATTTGGTTCAGCAGCTGGCTTTACGCCGAGGGACCACACAAGTGCGTCGGTTCCATATGTTTCTTTCTAACTTGTATGATAATGGCTGTATTCTGTGCTGTTGCAGGCATGTTAAGTTTGATTTTGGTGTATCGGACGAAGAGTGTGTACTACAATCTCTATGGAAAATCTCGTACATCGACGCTTTCGTAG 2664 49.81 MSTENPPPSPPAPSSKPLALDVPLQALGFEVEHASSQRVSGRLLVSPNCCQEFGGVSGQIKRNRGGQRQQGPNGGDRATGQGRGRPYGSAQVGPTLWSGLPLGRFPDPISVRLSSSAPCASECFDMKLEDRKWTPKTKLAKRSEGPSLGPTPAQPQPWAEAEAHGWPRPDPARAEVFRLRLVRGAPIPRDSVMDRLRTLENLEHLNPDPETHSLDSFLLLCSFALHLQLSDLSIGGGVASTTPVCRRALNRTEFGFWAFMGRCNEKLVAFLNNRWLVFVAAIWVQSCAGIGYLFGSISPVIKTNLSYNQRQIARLGVAKDLGDSVGVLAGTLSEILPFWGTLLVGALNNFVGYGWLWLIVTGRAPVLPLWARIWVWGDDLFLANLIDDGPESILACALGLMCVLVFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYAIMHSPDSANLIFMIAVGPAMVAIGMMFFIRPVAGHRQIRPSDGMSFTSVYGVCLLLAAYLMGVMLIEDLVTLNPTVIAIFTAVMFVILLTPFLIPVTLTLSSETTTFPEQEALLQQSPKQEPARSETDGNEVIFSEVEDEKSEGEDLLPALERQKRIAQLQTRLLQAAAEGAVRVKRRKGPRRGEDFTLGQALIKADFWLIFFSLLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIVVRDYAYPRPIAMATAQFLMIFGHVFIGMGWPGAMYIGTLITGLGYGAHWAIVPATASELFGLKKFGALYNFLTLSTPMGSLIFSGLIASSIYDSEAEKQAHNHNHLSQLQSSSSIWFSSWLYAEGPHKCVGSICFFLTCMIMAVFCAVAGMLSLILVYRTKSVYYNLYGKSRTSTLS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46524240 46533250 - Maker00039142 Lcy10g2287 645798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2287 887 SUPERFAMILY MFS general substrate transporter 268 491 IPR036259 -
Lcy10g2287 887 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 273 877 - GO:0016020(PANTHER)
Lcy10g2287 887 Pfam Nodulin-like 395 550 IPR010658 -
Lcy10g2287 887 Pfam Nodulin-like 274 371 IPR010658 -
Lcy10g2287 887 MobiDBLite consensus disorder prediction 56 93 - -
Lcy10g2287 887 SUPERFAMILY MFS general substrate transporter 500 873 IPR036259 -
Lcy10g2287 887 MobiDBLite consensus disorder prediction 563 584 - -
Lcy10g2287 887 MobiDBLite consensus disorder prediction 563 577 - -
Lcy10g2287 887 MobiDBLite consensus disorder prediction 135 167 - -
Lcy10g2287 887 CDD MFS_Mch1p_like 274 859 - -
Lcy10g2287 887 MobiDBLite consensus disorder prediction 62 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2287 Lcy-Chr10:46524240 Lcy12g0548 Lcy-Chr12:6673485 1.37E-97 dispersed
Lcy10g2287 Lcy-Chr10:46524240 Lcy8g1243 Lcy-Chr8:38966669 1.66E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2287 - - - 0.0