Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2292 ATGGATAATTACCAAATCTTCTTTCCAGCTTCTTCGTCGTCTAATAACTCAGTGCCAATGGGCATGGAATTATTAACAGAAGAAGACCATCAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGATGATGAAATTAAGAATAATAATGGAGGGAAATTGAAAGGAGAGACGAAGAAGATTAGAAAGCCCAGATTTGCTTTTCAAACAAGAAGCCAGGTTGATGTGCTTGATGATGGCTACCGATGGAGAAAATATGGTCAAAAGGCTGTTAAGAACAACAAGTTTCCCAGGAGCTATTACAAGTGTTCGCATCAAGGATGCAAAGTGAAGAAGCAAATCCAACGGCTAACAAATGACGAAGGCGTTGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATTGAAAAGCCTCAAGATAACTTTGAACATATCTTGACCCACATGCAAATTTACCCTTCCTTTTAG 471 39.7 MDNYQIFFPASSSSNNSVPMGMELLTEEDHQEEEEEEEEEEEDDEIKNNNGGKLKGETKKIRKPRFAFQTRSQVDVLDDGYRWRKYGQKAVKNNKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVLTTYEGVHSHPIEKPQDNFEHILTHMQIYPSF 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46551930 46553992 - Maker00039382 Lcy10g2292 645803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2292 156 MobiDBLite consensus disorder prediction 1 21 - -
Lcy10g2292 156 Coils Coil 22 47 - -
Lcy10g2292 156 Gene3D WRKY domain 62 137 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2292 156 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 28 137 IPR044810 GO:0003700(InterPro)
Lcy10g2292 156 ProSiteProfiles WRKY domain profile. 72 137 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2292 156 SMART WRKY_cls 77 136 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2292 156 Pfam WRKY DNA -binding domain 78 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2292 156 SUPERFAMILY WRKY DNA-binding domain 69 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy10g2292 156 MobiDBLite consensus disorder prediction 27 45 - -
Lcy10g2292 156 MobiDBLite consensus disorder prediction 46 62 - -
Lcy10g2292 156 FunFam WRKY transcription factor 57 63 137 - -
Lcy10g2292 156 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0086 Lcy-Chr10:1188721 Lcy10g2292 Lcy-Chr10:46551930 5.52E-58 dispersed
Lcy10g2292 Lcy-Chr10:46551930 Lcy6g0849 Lcy-Chr6:8565978 2.08E-34 dispersed
Lcy10g2292 Lcy-Chr10:46551930 Lcy11g1096 Lcy-Chr11:32924677 5.73E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19062 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2292 - - - 0.0