Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2312 ATGGCTCTACTGGAGATTTGCTTTGTTTTCATTGTGAGCAACCATTTTTCGTTTGTGTCTTCTGTGAATGAAGAGGGATTGGCTCTACTTTCCTTCAAAAACTCCACTTTTGATGCTGATGGCTTTCTCCAAAACTGGAACTCCTCGGACGCGACCCCGTGTTCGTGGAATGGAATCAATTGCACAGAACAGAGCGTTGTCTCTCTCACTATTGCAGACAAGAAACTCTCTGGTACTCTCCATCCTGCACTTGGGAAACTTGTGTCACTCCGCCATTTGAGCCTTCGAAACAACAAGCTTTTTGGAAGCTTACCTGTTGAGCTCTACAACCTGGTAGAGTTACAAAGCTTAGACCTCTCACAAAATGTCTTCAATGATTCTATTCCAGATGGATTTGGTTCCCACTTGACATCTCTTCAGAATCTCAATCTTTCTTTCAATGTGATTCGCGGTTCGATCCCTGCAGACTTTGGCAACTTGTCCAACTTGCGAGCTACTCTCGATTTGTCTCACAATGTCTTTACCGGTCCAATCCCGCTGAGCCTGAGCAGCCTCCCTGCAAGCCTTTATATTGATCTCAGTTACAATAATCTCAGTGGCTCAATACCACCACAAGAAGCTTTCCAGAACCTCGGACCAACAGCTTACATAGGCAATTCCTTCCTATGTGGATTTCCCCTCAATGTTTCATGCCCGTCTATAGCGCGAACGTCAAACCCCGACTCTTGGTTCCATTGCCCATCACATGGGAAAGGTGGAAAATTTTGCTCCATGATCACAGTTACAGCAAGTATCATAGTTGGTTTCTGCCTGGTTATCCTGGTAGTTTTTTGGTGCAAGAGAGCATATCCTCCTAAAGGGAGTGAAACTCCAAATGGCTGCAACTTTAGAGAGGCATTGATGTTTAAAACAGAGCTTTCTTGCTTTGCAAGATATGAAGTTGAGCCCCTACCAGAAAACATGGAGAAGTATAACTTCGTGCTACTGGATCGGCAAGTCGACTTTGATCTCGAGCAACTTCTGAAAGCCTCAGCTTATCTTCTGGGCAAGAATGGGAATGGGATTGTGTATAAAGTGGTGCTAGAGAAAGGACTAAAGCTAGCTGTAAGAAGATTGGAAGATGGAGCTTATGAAAGGTTTAAAGAGTTCCAAACTGAAGTTGAAGCAATTGGGAAAGTCAGACATCCCAATATTGTAGCTCTTTTAGCTTACTGCTGGTCTGTTGAAGAGAAGCTGCTCATACATGAATACATACCTGAGGAAGACCTTGCCACTGCAATTCATGGGAAAGCAGAAATTTCCTACTTCAGACCACTTTCTTGGGCTGATCGAGTGAAAATCATGAAAGGAATAGCAAAGGGATTGACATACCTTCACGAATTCAGTCCAAGAAAATACGTCCACGGCGATTTGAAGCCGACCAACATTCTTCTCGGCAACAACATGGAACCCTACATCTCAGATTTCGGACTCGGACGACTTGCAAATGCCGCCGGAGATTTCACCGCCACACCATCGGAGACAAGCGCTGCCGCAACGCCGCGGCAGCAGAACTCTCCGTTCCGATCAAACTCCATGTGCTCGTCTCTGTCGATAGGGTCCTATTATCAAGCTCCCGAAGCGTTGAAGGCGGCAAAGCCATCGCAGAAGTGGGATGTTTACTCATTCGGAGTGATTTTACTGGAAATCATCACCGGAAAGTTGCCGGTGATTCAAGCGGGTTCGTCGGAGATGGAGCTGGTTCAATGGATTCAACTTGGAATTGATGAAGGGAAACGGCCGTCGTGTATCATAGATCCGTCGATGGGTGAGCAAGTGGACAAGGAAGAAGCTGCGGCGGCCATTGAAATAGCAGTTGCTTGCACTCGGAAGAGCCCTGAGAAGAGACCTTGTATGAGAATTGTCTCTGAATGTCTGGAAAAATTGGCAACTTCATCGTAA 1941 45.85 MALLEICFVFIVSNHFSFVSSVNEEGLALLSFKNSTFDADGFLQNWNSSDATPCSWNGINCTEQSVVSLTIADKKLSGTLHPALGKLVSLRHLSLRNNKLFGSLPVELYNLVELQSLDLSQNVFNDSIPDGFGSHLTSLQNLNLSFNVIRGSIPADFGNLSNLRATLDLSHNVFTGPIPLSLSSLPASLYIDLSYNNLSGSIPPQEAFQNLGPTAYIGNSFLCGFPLNVSCPSIARTSNPDSWFHCPSHGKGGKFCSMITVTASIIVGFCLVILVVFWCKRAYPPKGSETPNGCNFREALMFKTELSCFARYEVEPLPENMEKYNFVLLDRQVDFDLEQLLKASAYLLGKNGNGIVYKVVLEKGLKLAVRRLEDGAYERFKEFQTEVEAIGKVRHPNIVALLAYCWSVEEKLLIHEYIPEEDLATAIHGKAEISYFRPLSWADRVKIMKGIAKGLTYLHEFSPRKYVHGDLKPTNILLGNNMEPYISDFGLGRLANAAGDFTATPSETSAAATPRQQNSPFRSNSMCSSLSIGSYYQAPEALKAAKPSQKWDVYSFGVILLEIITGKLPVIQAGSSEMELVQWIQLGIDEGKRPSCIIDPSMGEQVDKEEAAAAIEIAVACTRKSPEKRPCMRIVSECLEKLATSS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46762621 46765338 - Maker00039784 Lcy10g2312 645823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2312 646 MobiDBLite consensus disorder prediction 505 525 - -
Lcy10g2312 646 Gene3D Ribonuclease Inhibitor 25 135 IPR032675 -
Lcy10g2312 646 FunFam Leucine-rich repeat receptor-like kinase 25 136 - -
Lcy10g2312 646 SUPERFAMILY Protein kinase-like (PK-like) 347 640 IPR011009 -
Lcy10g2312 646 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Lcy10g2312 646 SMART LRR_typ_2 87 110 IPR003591 -
Lcy10g2312 646 SMART LRR_typ_2 136 159 IPR003591 -
Lcy10g2312 646 SMART LRR_typ_2 111 135 IPR003591 -
Lcy10g2312 646 SMART serkin_6 342 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2312 646 ProSiteProfiles Protein kinase domain profile. 342 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2312 646 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515(InterPro)
Lcy10g2312 646 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
Lcy10g2312 646 Pfam Leucine Rich Repeat 89 111 IPR001611 GO:0005515(InterPro)
Lcy10g2312 646 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Lcy10g2312 646 SUPERFAMILY L domain-like 24 227 - -
Lcy10g2312 646 Gene3D Phosphorylase Kinase; domain 1 315 417 - -
Lcy10g2312 646 Gene3D Transferase(Phosphotransferase) domain 1 419 646 - -
Lcy10g2312 646 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Lcy10g2312 646 Pfam Protein kinase domain 348 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2312 646 Gene3D Ribonuclease Inhibitor 136 233 IPR032675 -
Lcy10g2312 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2312 646 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 130 IPR050647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2312 Lcy-Chr10:46762621 Lcy7g0496 Lcy-Chr7:4404296 1.42E-156 dispersed
Lcy10g1468 Lcy-Chr10:38633280 Lcy10g2312 Lcy-Chr10:46762621 7.27E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65432 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2312 - - - 0.0