Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2317 ATGGTCAAATTTCGCTCAGGAATCTATCCCTCGCTTCACGTGACTGTCAACAGTGAATTTGTAGGTGAGCGGGAAAAACGTGACCTGCGAGACGAGCAAACGTTGCACACCGGTGTGGCTCCTCCTAGGGTTTCCACCACTGCCGGGCTCCCCGTGACCACCAGGGGAGCATTTGGGCCTTTGGCCTGGGTCGGCCTCGGCAATGGGCCGAGGCCGACCGTGACCCTCGGCCTCTCCCCTGGGCCGAGGCCGAGGGTCACCTCATGGGGCCGGGATGTATCCCGGCCCTTTGTTCCGTTGGCTCGGTCTCTTCCGCTTTTGGGCCTGACGGGCTTGGGCCTTCCTGCATTGAATACTTCACAAGCCAAAGAAGTCCAAGAAAACAAAACCCCTTATAATCGCTCAGTTTATTTACGGAAGACCGTATTTGTTTTATCATTAGGTGTTTCAATTGGAGGAGCATGTATGGTGGCAACAATTTTAGGATGCTGCATCTTCTTTTGTTTGCGAAGAAAGAAGAAACATCCAATTGGATCTATAAGCAAAGAAGCTCCTTCTCCCCCTGTTTCTGATCCTCTTTCAAACAAAGATATTCCCCCTGCTCCTCTCTTACACTCCTTTCAGAGTCACAGCATCCCTTCTTATCCCTTTTCCAAATCTGACCTTGACAAGACTGGCTCCAACCATGACATTCAAGTATTCAATTATGCCGAACTCGAAAAGGCTACCGATAGTTTTAACCGTTCTCGAGAGCTTGGCGATGGAGGATTTGGCACTGTCTACTATGGGAGGCTGCGTGATGGGCGTGAAGTGGCTGTGAAGCGTCTGTATGAACACAATTGGAAACGAGTGGAACAGTTCAGGAACGAAGTGGACATCCTTGCTCATTTGCAGCACAAGAACCTTGTGAAACTCTACGGCTACACCTCCAAAATTAGCCAAGGCCTTGTCCTGGTCTACGAATACATTCCCAATGGAACGGTAGCCGACCATCTTCACGGTTCACGGGCGAAGTTCGGTTTGCTCAGTTGGCCTATTCGGTTGCAAATCGCCATCGAAACAGCGAATGCACTTGCGTTCCTCCATCGCTCTGAAATCATCCACCGCGACGTCAAAACCAATAACATTCTCCTTGACAACAACTTCACTGTCAAAGTGGCTGATTTTGGCCTTTCAAGACTGTTCCCTACTGATGTAACTCATGTGTCCACTGCTCCACAAGGCACGCCTGGCTATGTCGATCCTGAATACTACCAATGTTATCAGCTCACTACTAAGAGCGACGTATACAGCTTTGGAGTGGTCTTGATCGAGCTTATATCGTCGCTACGAGCAGTTGACACAGAAAGGAAACGACAAGATATCAATTTGAGCAACATGGCAGTGAGTAAAATACAAAGTCGGGCATTGAATGAGTTGGTCGATCCAAAACTCGACTTTGACAATAATCATGAAGCTATGAGGGCGATAACATCAGTTGCGGAGTTGGCTTTTCGATGCCTTCAACATGAAAGGGATATGAGGCCTTCAATGGAAGAAGTGGTGGATGTACTAAGGGAGATTGAGAATGACAATTCCAACTCCGGGATGGCTGAAGTTGCCGATAGAGGAGTCGTTGGAAACGATATCGAGTCGATGAAGAGAATGTCACCTTCCTTTTCACCAAATTCTGTCATAGCTGACAATTGGGTTAGCAGCTCTACCATCACAAATTCCTTGTGA 1722 48.37 MVKFRSGIYPSLHVTVNSEFVGEREKRDLRDEQTLHTGVAPPRVSTTAGLPVTTRGAFGPLAWVGLGNGPRPTVTLGLSPGPRPRVTSWGRDVSRPFVPLARSLPLLGLTGLGLPALNTSQAKEVQENKTPYNRSVYLRKTVFVLSLGVSIGGACMVATILGCCIFFCLRRKKKHPIGSISKEAPSPPVSDPLSNKDIPPAPLLHSFQSHSIPSYPFSKSDLDKTGSNHDIQVFNYAELEKATDSFNRSRELGDGGFGTVYYGRLRDGREVAVKRLYEHNWKRVEQFRNEVDILAHLQHKNLVKLYGYTSKISQGLVLVYEYIPNGTVADHLHGSRAKFGLLSWPIRLQIAIETANALAFLHRSEIIHRDVKTNNILLDNNFTVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTTKSDVYSFGVVLIELISSLRAVDTERKRQDINLSNMAVSKIQSRALNELVDPKLDFDNNHEAMRAITSVAELAFRCLQHERDMRPSMEEVVDVLREIENDNSNSGMAEVADRGVVGNDIESMKRMSPSFSPNSVIADNWVSSSTITNSL 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46804636 46808240 - Maker00039968 Lcy10g2317 645828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2317 573 ProSiteProfiles Protein kinase domain profile. 246 521 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2317 573 FunFam Wall-associated receptor kinase-like 20 323 531 - -
Lcy10g2317 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy10g2317 573 SUPERFAMILY Protein kinase-like (PK-like) 229 521 IPR011009 -
Lcy10g2317 573 SMART serkin_6 246 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2317 573 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 129 568 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lcy10g2317 573 Pfam Protein kinase domain 247 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy10g2317 573 Gene3D Transferase(Phosphotransferase) domain 1 323 543 - -
Lcy10g2317 573 CDD STKc_IRAK 252 521 - -
Lcy10g2317 573 ProSitePatterns Protein kinases ATP-binding region signature. 252 274 IPR017441 GO:0005524(InterPro)
Lcy10g2317 573 Gene3D Phosphorylase Kinase; domain 1 218 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2317 Lcy-Chr10:46804636 Lcy2g0422 Lcy-Chr2:3532563 1.85E-148 dispersed
Lcy12g1525 Lcy-Chr12:35063726 Lcy10g2317 Lcy-Chr10:46804636 5.75E-20 dispersed
Lcy10g2317 Lcy-Chr10:46804636 Lcy3g0133 Lcy-Chr3:3385088 2.57E-179 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65433 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2317 - - - 0.0