Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2329 ATGTTGACACGTGTAGGTCACTGTACAAAAGTCATGCGCAGCGTCAATATGGAAAACCTGAGGAGTGGGTATTTGTTCCCTGAGATATCTATGCGAGAATACGAACACTCTCAAAGATACCCAGATGCAAAGATAATTAAACTTGGAATAGGTGACACTACACAACCTATACCAGACTGTATTGCATCGGCTATGGCGAAAAAAGCAATTGCTCTGTCAACTGTAGGAGGCTACAGTGGTTATGGAGATGAGCATGGCAACATGGAACTGAGGAAGAGAATTGCAGAAAAGTTTTACAGAACAATGGGCATAAAGGGGGAGGAAGTTTTTGTCTCGGATGGAGCTCAGTGTGACATCTCTCGCCTTCAGATGCTTCTGGGATCAAACGTCACGGTGGCTGTGCAGGATCCTTCTTTCCCTGCATACGTAGATTCCAGCGTCATTTTCGGACGAGCGGGGGACCTACAAGGGCAAAACGGTAAATACGAAAGAATCGTGTACATGAACTGTACCCCCGAGAACGATTTTTTTCCAGATTTATCAAACACTCCCAGAACTGATATCATCTTCTTCTGCTCTCCGAACAACCCCACCGGAACCGCCGCCTCCGCCGCTCAACTCCGCCGCCTCGTCGACTTCGCCACCGCCAATGGCTCCATCATCGTCGCAATTGAAATATCATCCTTCTCCAAATTCGCAGGCTTCACCGGCGTCCGCCTCGGCTGGACGGTGGTTCCGGAGGAGCTATCGTATTCGAACGGATTTCCGATCATAAAGGATTACGATCGAATCGTCTGTACGTGCTTTAATGGCGCCTCCAACATCGTTCAGGCCGGTGGCCTTGCTTGCCTTTCCACCGAAGGTTTCCAGGAGGTGAGCAGAGTGGTGGATTACTACAAGGAGAACGCCAAGATTCTGGCAGAGGCCTTCCGAGGTCTGGGAATGGAGGTCCATGGAGGCCAAAACGCACCGTATCTGTGGGTGCATTTTCCAGGATCGAGCTCGTGGGAGATATTTGCAGAGATTCTGGAGAAGACGCACATCGTGACGATTCCGGGAAGGGGATTTGGGCCCGGCGGCGAGGCGTACATAAGAGTGAGTGCGTTCGGCCGTAGAGAAACAATTCTAGAAGCTTCCAAGAGGCTCACAAGTCTTCGCAAACTGATCTTCAATTAG 1176 50.17 MLTRVGHCTKVMRSVNMENLRSGYLFPEISMREYEHSQRYPDAKIIKLGIGDTTQPIPDCIASAMAKKAIALSTVGGYSGYGDEHGNMELRKRIAEKFYRTMGIKGEEVFVSDGAQCDISRLQMLLGSNVTVAVQDPSFPAYVDSSVIFGRAGDLQGQNGKYERIVYMNCTPENDFFPDLSNTPRTDIIFFCSPNNPTGTAASAAQLRRLVDFATANGSIIVAIEISSFSKFAGFTGVRLGWTVVPEELSYSNGFPIIKDYDRIVCTCFNGASNIVQAGGLACLSTEGFQEVSRVVDYYKENAKILAEAFRGLGMEVHGGQNAPYLWVHFPGSSSWEIFAEILEKTHIVTIPGRGFGPGGEAYIRVSAFGRRETILEASKRLTSLRKLIFN 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46898668 46904329 - Maker00039581 Lcy10g2329 645840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2329 391 Gene3D Aspartate Aminotransferase, domain 1 14 70 IPR015422 -
Lcy10g2329 391 Gene3D Aspartate Aminotransferase, domain 1 251 386 IPR015422 -
Lcy10g2329 391 CDD AAT_like 46 382 - -
Lcy10g2329 391 Pfam Aminotransferase class I and II 226 381 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Lcy10g2329 391 Pfam Aminotransferase class I and II 44 222 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Lcy10g2329 391 SUPERFAMILY PLP-dependent transferases 23 382 IPR015424 -
Lcy10g2329 391 FunFam LL-diaminopimelate aminotransferase, chloroplastic 55 223 - -
Lcy10g2329 391 PANTHER AMINOTRANSFERASE 6 222 IPR019942 GO:0008483(InterPro)|GO:0009507(PANTHER)|GO:0009862(PANTHER)|GO:0062034(PANTHER)|GO:0062045(PANTHER)
Lcy10g2329 391 Gene3D - 74 250 IPR015421 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2329 K10206 - - csv:101216470 667.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2329 Lcy-Chr10:46898668 Lcy6g0417 Lcy-Chr6:3936654 1.57E-158 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g354 . . . . . . . . . . . . . . Sed11g2297 . . Bhi04g02497 Tan11g0087 Cmetu03g1388 . Hepe02g3438 . Lcy10g2329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00761 Cam11g0795 Cec11g0776 Cco11g0782 Clacu11g1063 Cmu11g0922 Cre11g1239 . . Chy03g00068 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010966 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31