Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2331 ATGGCAACTTCACCGACTGCTAAAAGGGATGAGGAACAGGGCCTTTCTAAAGAGAAAGATGGAGGGGAGCCTACAGTGGAGATTGAACAGTCCTTATCAGTTAGCGAGGATAGTACCACACAAACAAAGGATGAAGGACTTGATGAAGTAGTAAAGGACAAGAACCTCGATTCGAAATGTGAGGCTGAAGATGAAGTGGTGGAGGGGGAGAATGTTCAAGGTGAATTGCATCACGAAGTGGAAGCCAAGTTGGATTTGCAGTCTGAATCTGAAGTTGAAAAGTCGGATGAGATTATTAGAAATGATGACTCTAATGAAAAGCTAGAAGAGGATAAGAATGCAGAATCTGAATCTTCATCCGATGATTCAGACAATGATGATGAATGTTTAGATTCCAAGGCTCAAATAGGGACAAACCAATCAGTTGGAGAAGTTCTTGGCGAGGAGAAAGCTCCAGAGCCAGTCTTTGATGGGACTGAGGTTCCTGGGATGGAAGGTAGTGGGAGTTTGTCAAATCGTTCCATGGATAGTGATTCAGGGAGCCAAGGTGCTGTTGACAGGGCTGATTCAGAGAGCCAAGGTGTTGTTGACAGGGCTTTGGCACTTAAAAACTTTGTTAAGGAAAAGGGTGTAGTCGCAGTCTCTAGTGTTTTACGTCGTTTTGCAGGAAAAAAAGATGAAGAATGTCCAGAGATTCCTAATGGCGAGACTAAGGATGATTCCAGTCCCAATAAAGAAAATGAAGACAAGGAAATTCCTGAAAAACCTTTGGAAAGATCTGCATGGAATCCTCTCAACTATATTAAGATATCCCGTGATGCTGATGCACAAATCAAAACTGAGCAGGTCGAGGATGTTGCTAGGGAACCAACATTTGATATTGTAATAAAAGGCAGAATTGTACTGTACACACGGTTGGGTTGTCAAGAATGCAAAGAGGCTCGACTATTTTTGTTTTGGAAGAGACTTAGATACGTCGAGATCAATATTGATGTTTATCCAGGTAGAAAATTGGAGCTTGAGAAAATTGCCGGGTCTTCTGCCGTTCCAAAGGTATTTTTTAATACGATCCTTATAGGAGGCTTGAACGAACTAAGAGAATTGGATGAGTCTGGCAAGCTTGATGAGAAAATTGAGTATCTGAAAGCTGAAGCACCAACACTTGAGGCCCCTTTACCACCGCTTTCTGGTGAAGATGATGTCTCCAGTAGTGGGACTGCTGATGAATTGGCTATGATTGTTCGAAAAATGAAAGAATCTATTGTTGTTAAAGACCGGTTCTACAAAATGCGACGATTCACCAACTGTTTCCTAGGCTCAGAAGCTGTGGATTTCTTATCAGAGGATCAATATTTGGAAAGGGAAGAGGCTATTGAATTTGGACGAAAGCTCGCAAGCAATCTTTTTTTCCAACATGTTCTCGAGGAAAATTTATTTGAAGATGGTAGCTACTTATACCGGTTCTTGGATGATGATCCCGTTGTGGCAACTCAGTGTCACAACGTTGCAAGAGGAATAATTGAGGTGAGGCCAAAGCGGATATCAGATATCGCATCAAGGCTGAGATTTTTATCCTTTGCCATTCTTGAAGCCTATGTATCAGAGGATGGAAAGCATGTAGATTACAGAAGTGTTCATGGGAGTGAGGAATTTGCTAGGTATTTGAGAATTGTTGAAGAGCTCCAAAGAGTCGAAGTACACAGTTTGGCACGGGAGGAGAAGCTCGCTTTCTTTATTAATCTCTACAATATGATGGCCATCCATGCAATATTGGTATGTGGTCACCCTGTTGGAGCGCTGGAAAGAAGAAAACTGTTTGGAGAATTCAAATATGTTATTGGAGGGTCCACTTACTCCCTTTCAGCTATTCAAAATGGAATTTTGAGGGCCAATCAGAGACCACCATACAATCTCATGAAGCCATTTGGTGCAAAAGATAAACGTTCTAAAGTCTCTCTTCCGTATATGGAGCCTTTAATTCATTTTGCACTAGTTTGTGGTACCCGATCTGGGCCTGCTCTTCGATGCTATTCTCCAGGGAACGTAGATCAAGAGTTAATGGAAGCAGCACGAAGTTTCTTAAGAGACGGAGGACTTGTCGTCGATTTGAATAACAGTGTTGCATCAGTTAGCATGATTCTTAAATGGTTTAGCACAGACTTTGGGAAGAACGAGCAAGAAGTCCTGAAGCATGCATCAAACTACATGAAACCAGATGATGCTCAAGCACTGCTTGAATTGCTTGCCGGTTCTCAGTTGAAGGTATTATATCAAACGTACGATTGGGGTTTGAACTGTTAA 2301 41.94 MATSPTAKRDEEQGLSKEKDGGEPTVEIEQSLSVSEDSTTQTKDEGLDEVVKDKNLDSKCEAEDEVVEGENVQGELHHEVEAKLDLQSESEVEKSDEIIRNDDSNEKLEEDKNAESESSSDDSDNDDECLDSKAQIGTNQSVGEVLGEEKAPEPVFDGTEVPGMEGSGSLSNRSMDSDSGSQGAVDRADSESQGVVDRALALKNFVKEKGVVAVSSVLRRFAGKKDEECPEIPNGETKDDSSPNKENEDKEIPEKPLERSAWNPLNYIKISRDADAQIKTEQVEDVAREPTFDIVIKGRIVLYTRLGCQECKEARLFLFWKRLRYVEINIDVYPGRKLELEKIAGSSAVPKVFFNTILIGGLNELRELDESGKLDEKIEYLKAEAPTLEAPLPPLSGEDDVSSSGTADELAMIVRKMKESIVVKDRFYKMRRFTNCFLGSEAVDFLSEDQYLEREEAIEFGRKLASNLFFQHVLEENLFEDGSYLYRFLDDDPVVATQCHNVARGIIEVRPKRISDIASRLRFLSFAILEAYVSEDGKHVDYRSVHGSEEFARYLRIVEELQRVEVHSLAREEKLAFFINLYNMMAIHAILVCGHPVGALERRKLFGEFKYVIGGSTYSLSAIQNGILRANQRPPYNLMKPFGAKDKRSKVSLPYMEPLIHFALVCGTRSGPALRCYSPGNVDQELMEAARSFLRDGGLVVDLNNSVASVSMILKWFSTDFGKNEQEVLKHASNYMKPDDAQALLELLAGSQLKVLYQTYDWGLNC 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46918639 46924566 - Maker00039143 Lcy10g2331 645842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2331 766 Gene3D - 400 495 IPR036388 -
Lcy10g2331 766 MobiDBLite consensus disorder prediction 1 194 - -
Lcy10g2331 766 Pfam Protein of unknown function, DUF547 567 694 IPR006869 -
Lcy10g2331 766 ProSiteProfiles DEP domain profile. 417 490 IPR000591 GO:0035556(InterPro)
Lcy10g2331 766 SMART DEP_3 417 490 IPR000591 GO:0035556(InterPro)
Lcy10g2331 766 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 66 766 - -
Lcy10g2331 766 Pfam Glutaredoxin 300 356 IPR002109 -
Lcy10g2331 766 SUPERFAMILY Winged helix DNA-binding domain 408 497 IPR036390 -
Lcy10g2331 766 Gene3D Glutaredoxin 296 381 - -
Lcy10g2331 766 MobiDBLite consensus disorder prediction 227 256 - -
Lcy10g2331 766 MobiDBLite consensus disorder prediction 165 188 - -
Lcy10g2331 766 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 421 488 IPR000591 GO:0035556(InterPro)
Lcy10g2331 766 MobiDBLite consensus disorder prediction 41 114 - -
Lcy10g2331 766 CDD DEP 409 487 - -
Lcy10g2331 766 MobiDBLite consensus disorder prediction 10 25 - -
Lcy10g2331 766 ProSiteProfiles Glutaredoxin domain profile. 288 385 - -
Lcy10g2331 766 SUPERFAMILY Thioredoxin-like 297 379 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1560 Lcy-Chr10:39956287 Lcy10g2331 Lcy-Chr10:46918639 8.11E-132 dispersed
Lcy10g2331 Lcy-Chr10:46918639 Lcy12g0288 Lcy-Chr12:3512548 1.98E-19 dispersed
Lcy10g2331 Lcy-Chr10:46918639 Lcy8g0671 Lcy-Chr8:24485216 3.73E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g352 . . . . . . . . . . . . . . Sed11g1510 . . Bhi04g02500 Tan11g0084 Cmetu09g1872 . Hepe02g3440 . Lcy10g2331 . . . . . . . . Cone7ag1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00765 Cam11g0798 Cec11g0780 Cco11g0785 Clacu11g1059 Cmu11g0919 Cre11g1244 . . Chy03g00066 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007851 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 1 2 1 1 36