Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2332 ATGCTATCGCCGGCGTTCGTCTCAACGGCCACCATTTCTCAGCCACCGCCTTGTTTCTCCGTTCCACCACCGCCAACATCCCTATTCGCACGACGAACCTGTTCCATACAGAACCTCACAAGTATCCACCGTTGTAAAAGCTCCACAAATCTTCGGTTCAATTTCGTCAAAGACCCATCCAGAGCTTCGCATGTCTCCTGCACAACGGAAACAAGTACTGGTCAAGAACACGCCGATGTCGAATCTTGCAGCAACCAGTCGGTGAGTGGATGTGTAAGTCCTTATTTGATTGCTGTTTGGATTCGGTCTAGTCGTAGCGTCAAGGAATTGAGGGCGATACATGCGTTCATTTTAAGAAATTTGACATGTTTCGTGATCTATGTTGGGAACAATTTGATTAGTTCATACTTGAGATTCGGGATGTTGGTTGATGCTAGAAAGGTGTTCGACGAAATGCCGATGAGGAACGTTGTTACCTGGACGGCTATTATTAATGGATATACTGATTTTGATTTGACTGAAGAAGCTTTAGGGTTGTTCTTGGATTCAGTTAAGAGCGGGGTTCAAGCGAACGGGAAGATGTTCGTTTGCATCTTGAATTTGTGTGCTAAAAGGTTGGATTTTGAGCTTGGGCGGCAAATTCATGGTGTCATTGTGAAAGGTAGTTGGGGGAATTTGATTGTAGACAGTGCCATTGTTTACTTTTATGCACAGTGTAAAGATATTTCCAGTGCTTTTGTTGCATTTGAACATATGCCAAAGCGGGATGTTGTTTGTTGGACTTCCATGATTACTTCTTGTTCCCAACAAGGGCTTGGACGAGAAGCAATTTCAATGTTTTCAAATATGCTAAGCGATGGATTTCTACCAAATGAGTTTTCTGTATGCAGTGTTCTCAAAGCTTGTGGAGAAGAGAGGGAGTTGAAGATAGGGAGACAGTTACATGGCTTGGTAATTAAGAAAATAATAAAGAACGATGTTTTTGTTGGGACTTCCTTGGTCGATATGTATGCCAAGTGTGGGAATTTGGCTGATTCAAGAGAAGTATTCAATGGGATGAGGAACAGAAACACGGTTACGTGGACGTCGATCATAGCTGGCTATGCATGGGAGGGGCTCGGTGAGGAGGCCATCGACCTCTTTAGATTGATGAAGAGGCAGAGGATTCCTGCCAATAATTTGACCATTGTAAGCGTTCTCCGTGCTTGTGGCTCGATTGAGGCTTTGTTGACAGGGAGGGAAGTTCATGCTCAGATTGTAAAAAATTCATTTCAGACTAATGTACACATAGGAAGCACTCTAGTATGGTTCTACTGTAAATGTAGAAATCAACATAAGGCCTCGATGGTTCTTCACCAGATGCCTCTTAGAGATGTGGTTTCCTGGACAGCCATTATTTCTGGCTGTGCTCATCTTGGGCACGAGTCCGAGGCTCTCGAGTTTCTAAAAAACATGATAGAAGAAGGAGTCGAACCGAATTCCTTTACTTATTCTTCGGCTTTAAAAGCATGTGCCAAGATGGAAGCCATTCGCCAGGGGAAGTTGATCCACTCCTCTGCAAATAAAACATCTGCATTGTCCAATGTTTTTGTGGGAAGTGCACTGATTTACATGTATGCAAAATGTGGATACGTAACCGAAGCTTCTCAAGTTTTCGACAGCATGCCGGTGAGGAATTTGGTTTCTTGGAAGGCGATGATTTTGGGTTATGCTAGGAACGGTCTCTGCCGAGAAGCGTTAAAGCTTATGTACCGGATGCAGGCTGAAGGTATTGAAGTGGATGACTACATTCTTGCAGCAGTTTATGGAGCTTGTGGAGATGTCAAGTGTGATGTGGATCCATCACTTGAATATAGCTTGCAAACCCGTTGA 1872 43.8 MLSPAFVSTATISQPPPCFSVPPPPTSLFARRTCSIQNLTSIHRCKSSTNLRFNFVKDPSRASHVSCTTETSTGQEHADVESCSNQSVSGCVSPYLIAVWIRSSRSVKELRAIHAFILRNLTCFVIYVGNNLISSYLRFGMLVDARKVFDEMPMRNVVTWTAIINGYTDFDLTEEALGLFLDSVKSGVQANGKMFVCILNLCAKRLDFELGRQIHGVIVKGSWGNLIVDSAIVYFYAQCKDISSAFVAFEHMPKRDVVCWTSMITSCSQQGLGREAISMFSNMLSDGFLPNEFSVCSVLKACGEERELKIGRQLHGLVIKKIIKNDVFVGTSLVDMYAKCGNLADSREVFNGMRNRNTVTWTSIIAGYAWEGLGEEAIDLFRLMKRQRIPANNLTIVSVLRACGSIEALLTGREVHAQIVKNSFQTNVHIGSTLVWFYCKCRNQHKASMVLHQMPLRDVVSWTAIISGCAHLGHESEALEFLKNMIEEGVEPNSFTYSSALKACAKMEAIRQGKLIHSSANKTSALSNVFVGSALIYMYAKCGYVTEASQVFDSMPVRNLVSWKAMILGYARNGLCREALKLMYRMQAEGIEVDDYILAAVYGACGDVKCDVDPSLEYSLQTR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46926389 46928260 - Maker00039540 Lcy10g2332 645843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2332 623 Pfam PPR repeat family 255 302 IPR002885 -
Lcy10g2332 623 Pfam PPR repeat family 457 506 IPR002885 -
Lcy10g2332 623 Pfam PPR repeat family 356 403 IPR002885 -
Lcy10g2332 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Lcy10g2332 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Lcy10g2332 623 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 513 612 - -
Lcy10g2332 623 PANTHER OS07G0578800 PROTEIN-RELATED 209 405 IPR045215 GO:0003723(InterPro)|GO:0003723(PANTHER)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Lcy10g2332 623 Gene3D Tetratricopeptide repeat domain 517 613 IPR011990 GO:0005515(InterPro)
Lcy10g2332 623 Gene3D Tetratricopeptide repeat domain 410 516 IPR011990 GO:0005515(InterPro)
Lcy10g2332 623 Gene3D Tetratricopeptide repeat domain 102 220 IPR011990 GO:0005515(InterPro)
Lcy10g2332 623 Gene3D Tetratricopeptide repeat domain 317 409 IPR011990 GO:0005515(InterPro)
Lcy10g2332 623 Pfam PPR repeat 561 591 IPR002885 -
Lcy10g2332 623 Pfam PPR repeat 158 188 IPR002885 -
Lcy10g2332 623 Pfam PPR repeat 533 559 IPR002885 -
Lcy10g2332 623 Pfam PPR repeat 130 156 IPR002885 -
Lcy10g2332 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Lcy10g2332 623 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 188 307 - -
Lcy10g2332 623 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Lcy10g2332 623 NCBIfam pentatricopeptide repeat 130 157 IPR002885 -
Lcy10g2332 623 NCBIfam pentatricopeptide repeat 258 292 IPR002885 -
Lcy10g2332 623 NCBIfam pentatricopeptide repeat 460 494 IPR002885 -
Lcy10g2332 623 NCBIfam pentatricopeptide repeat 561 594 IPR002885 -
Lcy10g2332 623 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 418 512 - -
Lcy10g2332 623 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 308 417 - -
Lcy10g2332 623 Gene3D Tetratricopeptide repeat domain 224 316 IPR011990 GO:0005515(InterPro)
Lcy10g2332 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Lcy10g2332 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2332 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2332 Lcy-Chr10:46926389 Lcy5g0269 Lcy-Chr5:2540626 2.20E-91 dispersed
Lcy10g2332 Lcy-Chr10:46926389 Lcy8g0166 Lcy-Chr8:3909254 2.02E-91 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g351 . . . . . . . . . . . . . . . . . Bhi04g02501 . . . Hepe02g3441 . Lcy10g2332 . . . . . . . . . Cone17ag1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00766 . . . . . . . . Chy03g00065 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012853 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 27