Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2333 ATGAAGCTGCATTGCGCAACTCTTCAGACCTCCTTCTCTTTCCCTGTCAGAGGCAGAGTTCTCGCTCATGGAGACGCCTCCGCCGCCTGCTCTCCCTCCTCGTGCTCGCTTTCAAGAATTCCAGCTCGAAATTTCTCATTGGGTTCAAAAAGTAGAGGGTTCCCCTCACTGGTCTGTCGAGTTAGACTGAAGAAATCATCATTTTCTGCCGTTGTCAGAGGGGAGAGTGCAGTACCTAGTGATTGTAGTTCAGAAACTCTTGATTCTTTGAATCCCACTCCCAGTGAGCCAGTAGGAAATGTTCAAAATGTAAAAGATGGCGTTGAATGCTTGGACCAGCATAAAATGACCAAAGTGTGTGACAAGCTCATTGAAGTCTTTCTGGTCGACAAGCCAACTCCAACAGATTGGAGACGATTAGTCGCTTTCAGCAAGGAATGGGACAATATCCGGCCCCATTTCTGTAGGAGGTGCCAAGATCGAGCTGCCAGTGAGGATGATCCTGGGATGCAGCATAAGCTACTCCGGCTTGGAAGAAAGCTGAAAGAGATTGATGAAGATGTGCAGAGACATAATGAACTTCTTGAAGTTATCAGAGCAGCAGCACCATCGGAACTTGGTGAAATTGTTTCTAGGCGTCGTAAAGATTTTACAAAAGAATTCTTTGTGCATCTTCACACAGTGGCCGAATCTTATTATGATGATCCGACTGAGCAAAATTGTAATACTGCATACTTTTTACTTGGGAACTCCTGCCTGGCTGCTGTGCAAGCATACGATGCTGCAACCGAAAACATTGAAGCACTAAATGCCGCGGAGTTGAAATTCCAGGATATCATCAATTCTCCAACTTTAGATGCTGCTTGCAGAAAGATAGACAGTTTGGCGGAGAAAAATCAACTTGATTCTGCATTAGTATTGATGATTACAAAAGCTTGGTCAGCTGCAAAGGAGTCGAACATGATGAAAGATGAGGTGAAAGACATACTATACCACTTGTACGTGACTGCAAGCGGCAACCTTCAAAGATTAATGCCAAAAGAAATCAGGATTCTGAAGTATCTTCTCACAATCAAGGATCCAGAGGAGAAGCTAAGTGCCCTGAAGGATGCATTTACCCCTGGAGAAGAACTTGAAGGACAAGACGTGGACTGCTTATACACGACACCAGAGAAGCTTCACACGTGGATAAAGACAGTGCTGGATGCTTATCATTTCAGCCGGGAAGGCACCCTCGTAAAGGAAGCCAGAGATCTTATGAATCCACAGGTCATCGTTAAACTTGAGGAATTGAAACATCTCGTTGAGAAAAAATTCATGTGA 1323 44.6 MKLHCATLQTSFSFPVRGRVLAHGDASAACSPSSCSLSRIPARNFSLGSKSRGFPSLVCRVRLKKSSFSAVVRGESAVPSDCSSETLDSLNPTPSEPVGNVQNVKDGVECLDQHKMTKVCDKLIEVFLVDKPTPTDWRRLVAFSKEWDNIRPHFCRRCQDRAASEDDPGMQHKLLRLGRKLKEIDEDVQRHNELLEVIRAAAPSELGEIVSRRRKDFTKEFFVHLHTVAESYYDDPTEQNCNTAYFLLGNSCLAAVQAYDAATENIEALNAAELKFQDIINSPTLDAACRKIDSLAEKNQLDSALVLMITKAWSAAKESNMMKDEVKDILYHLYVTASGNLQRLMPKEIRILKYLLTIKDPEEKLSALKDAFTPGEELEGQDVDCLYTTPEKLHTWIKTVLDAYHFSREGTLVKEARDLMNPQVIVKLEELKHLVEKKFM 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46929371 46933420 + Maker00039483 Lcy10g2333 645844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2333 440 MobiDBLite consensus disorder prediction 81 101 - -
Lcy10g2333 440 Coils Coil 181 201 - -
Lcy10g2333 440 PANTHER FOLATE RECEPTOR-LIKE 50 440 IPR040320 GO:0009535(PANTHER)|GO:0009941(PANTHER)
Lcy10g2333 440 MobiDBLite consensus disorder prediction 81 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2333 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2333 Lcy-Chr10:46929371 Lcy1g2722 Lcy-Chr1:53228671 2.90E-24 dispersed
Lcy10g2333 Lcy-Chr10:46929371 Lcy1g2723 Lcy-Chr1:53232822 9.22E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g350 . . . . . . . . . . . . . . . . . Bhi04g02503 . . . Hepe02g3442 . Lcy10g2333 . . . . . . . Cone4ag1361 Cone7ag1571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00767 Cam11g0801 Cec11g0783 Cco11g0789 Clacu11g1057 Cmu11g0917 Cre11g1247 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008547 1 2 1 1 0 1 2 1 1 0 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34