Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy10g2336 | ATGGCGGAAATGGATGGTTCGTTTGATCTTGGCTGGGCCCAATGTAAAAGGGCTCCACATGGGGCAGTTTTAGAAGTTTATTCCAAAAAGTTACTTGCAGTTGCAGGTTCGGCCATAGAAATCAACCTCGAGACTGCTGATTCATGGCGGACCGCCGGAAATGGCGACGTCGCCGGAAAATGCGGCATCGTTATCACACCTTGTTTGATCTGCCCACTATTTCAGAGCTTTCTGTGGTCATTTTCTACTGTTATTACACTTAGATTCAGAATTGGAAGGAGATGGGAATTTGAAGTTGTGTTCACTTTTCAGTTGGCTTTGGTTCATGATTGCTTCCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCCTCAACACAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGAAATGCCTTCGGTAGTCGACTAGATACGAGCATATCGCCTATTATAAAAGTGGACGACTGTGTGGACAATAAACCCGAGTTTATTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAGCCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGGTGTATACACAAGCTGCGTAGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGGTCGCTGAACTCAGAAAGGCGTTGCAAGTTCATATAACCGATATCGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCAAATGCTGCAAAGACTGATGTATTCTATTTAATGTCTGGAGTATGGAGAACATCGGCAGAGCGGTTTTTCCTCTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTAACAACTTACCTCACAGTACTCAAGCCATACTTCGAGCCGTTAAACGAACAACAGAGAGCCGATATCCACAAATTGCAACAGTCGTCTCGGCAAGCTGAAGATGCTCTGTCACAGGGAATGGAGAAACTGCACCAGAATCTGTCCCTCAGCATTGCCAATGATCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGACTAGAAGCATTGGAGAACTTTGTAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATTCTAACCACCAAACAAGCAGCGCAAGGCTTGCTCGCTTTGGGCGAGTACTTCCATCGTCTTCGTGTTCTCAGTTCCCTCTGGGCGACTCGACCTCGCGAACCGGCCTAG | 1458 | 45.75 | MAEMDGSFDLGWAQCKRAPHGAVLEVYSKKLLAVAGSAIEINLETADSWRTAGNGDVAGKCGIVITPCLICPLFQSFLWSFSTVITLRFRIGRRWEFEVVFTFQLALVHDCFHFTLMIGQQSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTSISPIIKVDDCVDNKPEFIPFESMDHLESSQEMNKPADDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVAELRKALQVHITDIELQILVESSLNHYHNLFCMKANAAKTDVFYLMSGVWRTSAERFFLWIGGFRPSELLNVTTYLTVLKPYFEPLNEQQRADIHKLQQSSRQAEDALSQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWATRPREPA | 485 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 46956212 | 46960845 | + | Maker00039345 | Lcy10g2336 | 645847 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy10g2336 | 485 | CDD | bZIP_HBP1b-like | 197 | 248 | - | - | |
Lcy10g2336 | 485 | ProSiteProfiles | DOG1 domain profile. | 266 | 480 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lcy10g2336 | 485 | Pfam | Seed dormancy control | 283 | 356 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lcy10g2336 | 485 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 200 | 215 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2336 | 485 | Pfam | bZIP transcription factor | 196 | 235 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2336 | 485 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 123 | 484 | - | - | |
Lcy10g2336 | 485 | Coils | Coil | 277 | 297 | - | - | |
Lcy10g2336 | 485 | Gene3D | - | 196 | 245 | - | - | |
Lcy10g2336 | 485 | SMART | brlzneu | 193 | 248 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2336 | 485 | SUPERFAMILY | Leucine zipper domain | 197 | 237 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy10g2336 | 485 | Coils | Coil | 216 | 243 | - | - | |
Lcy10g2336 | 485 | FunFam | BZIP family transcription factor | 196 | 245 | - | - | |
Lcy10g2336 | 485 | Coils | Coil | 371 | 391 | - | - | |
Lcy10g2336 | 485 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 195 | 239 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2336 | Lcy-Chr10:46956212 | Lcy6g0977 | Lcy-Chr6:10271897 | 2.00E-117 | dispersed | |
Lcy10g2336 | Lcy-Chr10:46956212 | Lcy10g0967 | Lcy-Chr10:31075962 | 1.88E-80 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19065 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy10g2336 | K14431 | - | csv:101217648 | 652.129 |