Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2336 ATGGCGGAAATGGATGGTTCGTTTGATCTTGGCTGGGCCCAATGTAAAAGGGCTCCACATGGGGCAGTTTTAGAAGTTTATTCCAAAAAGTTACTTGCAGTTGCAGGTTCGGCCATAGAAATCAACCTCGAGACTGCTGATTCATGGCGGACCGCCGGAAATGGCGACGTCGCCGGAAAATGCGGCATCGTTATCACACCTTGTTTGATCTGCCCACTATTTCAGAGCTTTCTGTGGTCATTTTCTACTGTTATTACACTTAGATTCAGAATTGGAAGGAGATGGGAATTTGAAGTTGTGTTCACTTTTCAGTTGGCTTTGGTTCATGATTGCTTCCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCCTCAACACAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGAAATGCCTTCGGTAGTCGACTAGATACGAGCATATCGCCTATTATAAAAGTGGACGACTGTGTGGACAATAAACCCGAGTTTATTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAGCCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGGTGTATACACAAGCTGCGTAGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGGTCGCTGAACTCAGAAAGGCGTTGCAAGTTCATATAACCGATATCGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCAAATGCTGCAAAGACTGATGTATTCTATTTAATGTCTGGAGTATGGAGAACATCGGCAGAGCGGTTTTTCCTCTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTAACAACTTACCTCACAGTACTCAAGCCATACTTCGAGCCGTTAAACGAACAACAGAGAGCCGATATCCACAAATTGCAACAGTCGTCTCGGCAAGCTGAAGATGCTCTGTCACAGGGAATGGAGAAACTGCACCAGAATCTGTCCCTCAGCATTGCCAATGATCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGACTAGAAGCATTGGAGAACTTTGTAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATTCTAACCACCAAACAAGCAGCGCAAGGCTTGCTCGCTTTGGGCGAGTACTTCCATCGTCTTCGTGTTCTCAGTTCCCTCTGGGCGACTCGACCTCGCGAACCGGCCTAG 1458 45.75 MAEMDGSFDLGWAQCKRAPHGAVLEVYSKKLLAVAGSAIEINLETADSWRTAGNGDVAGKCGIVITPCLICPLFQSFLWSFSTVITLRFRIGRRWEFEVVFTFQLALVHDCFHFTLMIGQQSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTSISPIIKVDDCVDNKPEFIPFESMDHLESSQEMNKPADDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVAELRKALQVHITDIELQILVESSLNHYHNLFCMKANAAKTDVFYLMSGVWRTSAERFFLWIGGFRPSELLNVTTYLTVLKPYFEPLNEQQRADIHKLQQSSRQAEDALSQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWATRPREPA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46956212 46960845 + Maker00039345 Lcy10g2336 645847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2336 485 CDD bZIP_HBP1b-like 197 248 - -
Lcy10g2336 485 ProSiteProfiles DOG1 domain profile. 266 480 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy10g2336 485 Pfam Seed dormancy control 283 356 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy10g2336 485 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 200 215 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2336 485 Pfam bZIP transcription factor 196 235 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2336 485 PANTHER TRANSCRIPTION FACTOR TGA9 123 484 - -
Lcy10g2336 485 Coils Coil 277 297 - -
Lcy10g2336 485 Gene3D - 196 245 - -
Lcy10g2336 485 SMART brlzneu 193 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2336 485 SUPERFAMILY Leucine zipper domain 197 237 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy10g2336 485 Coils Coil 216 243 - -
Lcy10g2336 485 FunFam BZIP family transcription factor 196 245 - -
Lcy10g2336 485 Coils Coil 371 391 - -
Lcy10g2336 485 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 195 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2336 Lcy-Chr10:46956212 Lcy6g0977 Lcy-Chr6:10271897 2.00E-117 dispersed
Lcy10g2336 Lcy-Chr10:46956212 Lcy10g0967 Lcy-Chr10:31075962 1.88E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19065 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2336 K14431 - csv:101217648 652.129