Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2342 ATGGACGCGTCGCCGGCGTCTTCTGAGGGTTCCTCGCGAGAGGTTCAATGCGTCGGAAAACTGGAAATAGTGAGACCAAAACCTGCCGGTGGTTTTCTATGCGGCTCTATTCCCGTTCCTACTGATAAAGAATTCCACGCCTTCAATTCTGCTCTAGTTCCTTCGCGCCAAACGGTGACAGCTCCGCGGTATCGAGTGCTTCCGACTGAGACAGATCTCAATTTACCTCCACTTCCTTCTAATTCCCATGAGAAGATTCTACCGATTGGGGCACTTCAGTCTAAAGATGCTGGAGATTTACCATGGGATGGGGGTGCTGTTGCTTCAAATCTTACTAGAAAATGTGAAGCTCTTGCTGTATCTGGTTTGGTGGAATATGGGGATGAAATAGATGTGATAGCTCCAGCTGACATTCTTAAGCAGATCTTTAAAATGCCTTATTCAAAGGCCCGATTATCCATTGCAGTTTATCGCATTGGACAAGCGCTTGTTCTGAGTACAGGGCCTGATGTTGAAGAGGGAGAAAAGCTGGTTAGGAGGCATAAAAATCAATCAAAGTGTGCAGAACAATCTTTATTTTTGAATTTTGCCATGCATTCAGTTAGAATGGAGGCTTGTGATTGTCCTCCAACTTATCATGCTACAACGGAGGAGCAATTTAAGTCATCTGTTCTTCCTGGAGGACGTACTTCTCAGGTTCTGGAGCAAACTGATGGTGTTTCACAGAAGGATTTTAATTCTTGTGCCCAATATAAAGAAGTTAAGCAAGATGCCTTCTTTTGGGGAAGTAAGAAGGGTAAAAGAAATAAGAAGCATGATCCCGTCAAAAAGGTTTCAGAAGTTGGTGGGAAGCCGAGGTGCTCAAATCAAGAGTCTGAAAAGCATAGAAGTGTTGGTGATGATGAATTTCTACGGGTTCTATTTTGGCAATTTTACAATTTTCGTATGCTTCTTGGTAGTGACCTGCTTCTGTTCAGTAATGAAAAGTATGTCGCTGTGAGTTTGCATTTATGGGATATTACCCGACAGGTCACTCCACTAACTTGGCTTGAAGCTTGGCTTGATAATGTCATGGCAAGTGTTCCTGAATTAGCCATATGTTATCATGAAAATGGTGTTGTTCAGGGTTACGAGCTTCTGAAAACAGATGATATATTCCTATTAAAAGGGGTCTCTGATGATGGTACTCCTGCTTTTCATCCTTATGTGGTACAACAAAATGGCCTTTCTGTCTTGAGATTTCTCCAAGAAAACTGCAAACAAGATCCTGGGGCTTATTGGCTTTATAAAGGTGCGGGTGAAGATGGGATTCAACTTTTTGATCTTTCTCTAATTCCTAAAAACCATTCTTCCAGTGATTTTGATGATAGCTCGAATTCCTTACCCTCGATGCTATATAGAGGGAGATGTGACTCCTTATTTTCATTTGGCACACTCCTCTACCGTATAGCTCACCGACTCTCACTGTCTATGAATCCATCCAATAAAGCCAAATGTGCGAGGTTCTTTAAGAAGTGTTTGGATTTTCTTGATGAACCTGATCACTTGGTGGTTCGTGCGTTTGCTCATGAACAGTTTGCAAGACTCATTTTAAACTATGACGAAGAATTAGATTTAACATTGGATTCTCTTCCACTGGGATGTGAAGTTGAAGTTGTGGATGCTGAAGAAGAAGAGTCGTTGGACTTTTTAAGCAGTATATCAGAAACGGCTAAGTATGAAGGTTCCTCCTCTCTTGTAGGAGAAGAAAAACTTGGGGAAGTTGAACAACATCATCAAAATTTGTTGTCAGAAGCTTGTTCATCAGTAACATCAGAGGCCTACGTATCTTCTCCAAGAAAGTTGATATCGTTGAGAGATCCACAAGGGATTGAACCACCGGTGGCTGCAGAAAATCCCCAAGACGAGGAAAGCTTTGCAGTCTGTAAAGTTTCTCCAACTGCCTCACATGTAGTTCAAACTGTTGCTGATCCAATATCTTCCAAGTTAGCTGCAATACATCATGTTTCTCAAGCTATCAAGTCCCTTAGATGGATGCGCCAGCTACAAAGCTCAGAACCAAAGATGGTGGACCATATTGGTGCCGTGCATGATAGTCTACCTTCTCCTATTAATATCTCTGTCTGTGCATGTGGTGATGCTGACTGTATTGAAGTCTGTGACCTTCGTGAATGGCTTCCAAAATCAAAATTGGACCATAGGTTATGGAAACTGGTTCTTCTGCTTGGAGAGTCTTATTTGGCTCTTGGCCAAGCATATAAGGAGGATGGCCAGCTGCATCAGGCTTTAAAAGTAGTAGAATTGGCATGTCTTGTTTACGGATCAATGCCCCAAGAACTTGAAGAGACTAGATTCATTTCCTCAATGGTCGGAAACCCAATTTTGCATAATAAATTGAATGATAAAGGTGAAAAGTTCAGATCATTCAATCAAGATCTGAAAGAAGTTGATTTGCACTGTCATGATTTTTCATTAGATCATTATTCTTCCACTTATCTGTTTTGGGCCAAGACATGGACATTAGTTGGAGATGTATATGTAGAGTTCCATTCGATATACGGTAGGGAAACCTCTGAAAAAGCAGAAAAGAACTTTTCCACAAGAGAATTGAAGATTTCATCTGAAGTTGTGAAAGAAGTTAATAGGCTCAAGAAGAAGCTTGGACAATTTAAGAACTGCAGTGCTTGCTCCTTGGTAAATTGCAGCTGCCAGAGTGATAGGGCAAACAGTGGAAGCAGTGCTAGCAGTAGTAGGGGAGAATCCATTGTCTACAGCAGAAAGCACAATAAAAAGACGCATTTTAAGACTTCCACTGTCCACTCAGTTTCAGGAGACCGTGATCATGATTATAATTGTCCAAAGATTGAGAATGGAATGGGTTCTAACACTAGACATCTTGAGCCAAAAAGAAATGCCCGAATCCATGTGAATTCCAAGGAATCTCAGAAATTCTCGGTGGATAATTCTGAAGAAGTGGAGGATAATGTGGAGGCTTGTGGTAATGTTCTTAGTGCGACCTTTCAATCTCATGTGAATTCCAAGGAATCTCAGAAAGTTAAAACTGGTGGAATATTTAAGTATCTTGGGGGTCCTGTCTCTAAAGGATCAGAATGCAATTTAACTGCAGCCCTAAGCTGTTATGAAGAAGCTAGAAAGGCGTTAGGTCAACTCCCAGCTGGATCCGTGGAACTGCAATCTGTTATGAGAAAAAAGGGTTGGGTTTGCAATGAACTAGGTCGATGGAGACTGGAAAGAAAGGAGCTGAAAAAAGCTGAAACGGCATTTGCAGGTGCTATTGATGCATTTAGAGCTGTTTCTGATCATACAAACATCATATTGATTAACTGCAATTTGGGTCATGGGAGGCGAGCATTAGCTGAGGAAATAGTATCAAAGATTGAAGATTTAAAAGTACATGCTATTGTACAGAATGCGTATTATCAAGCATTGGAGACTGCCGAAGTTGAATATACCGAATCACTAAGATATTATGGGGCGGCGAAAAATGAACTGAATGGTGTTGCTGAAGATTCTATTGCTGTGCCTGGCAACCTGAGGACTGAGGTTTACACACAGCTTGCTCACACGTATCTGAGGCTTGGTATGCTTTTGGCAAGGCTAGATATAAACGAGGTACATGATATTGAAACATTGGAAGATGTTGGGTCAGTTTACACAAATTCTAATAATAGAGGAGCTAAGAAAGGAGTGAAAAAACATAAGATTTCAGCAAATGATGCCATTAGGGAGGCACTATCTATATATGAATCTCTTGGTGAATTACGTAAACAGGAAGCCGCATATGCTTATTTCCAGCTAGCTTGTTACCAAAAGAATTGTTCTTTGAAGTATTTGGAGTCAGATGGCTGGGAAAAGTGCCTGTCTAAAGATGATAACAGCATTCTCCAACGGGTAAAACAGTATGCTTCCTTGGCTGAGAGGAACTGGCAAAGAGCCATGGAGTTTTATGGCCCTAAAACACATCCCACTATGTATCTGACCATTTTGGTCGAACGATCAGCTCTTTCATTAAGCTTGTCAAGCTCTTTACACTCAAATGCAATGCTAGAATTGGCATTCTCTCGCATGCTTGAAGGACGACACATTTCCGATGCCGATGCCGATTCTCTGAAAACGAAGTACTCTGAGATACATTTGAAATTTTGGAATCATTTGCAAACGCTATTGAAGAAAATGGTGGCGATGACACTTCCAACGAGTTCAGGCAAATGTTCTGCATCTCAACCTCATATGCCACTCAACAGATCTGGTGAAGCTTCAAGGCTGAGGGAGCTTTACAAAATGTCTTTGAAGTCCAGTGACTTGAGAGAACTGCACAAGATGCATACCTTGTGGACATCAAAATCGGAATGTTGA 4377 41.38 MDASPASSEGSSREVQCVGKLEIVRPKPAGGFLCGSIPVPTDKEFHAFNSALVPSRQTVTAPRYRVLPTETDLNLPPLPSNSHEKILPIGALQSKDAGDLPWDGGAVASNLTRKCEALAVSGLVEYGDEIDVIAPADILKQIFKMPYSKARLSIAVYRIGQALVLSTGPDVEEGEKLVRRHKNQSKCAEQSLFLNFAMHSVRMEACDCPPTYHATTEEQFKSSVLPGGRTSQVLEQTDGVSQKDFNSCAQYKEVKQDAFFWGSKKGKRNKKHDPVKKVSEVGGKPRCSNQESEKHRSVGDDEFLRVLFWQFYNFRMLLGSDLLLFSNEKYVAVSLHLWDITRQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPYVVQQNGLSVLRFLQENCKQDPGAYWLYKGAGEDGIQLFDLSLIPKNHSSSDFDDSSNSLPSMLYRGRCDSLFSFGTLLYRIAHRLSLSMNPSNKAKCARFFKKCLDFLDEPDHLVVRAFAHEQFARLILNYDEELDLTLDSLPLGCEVEVVDAEEEESLDFLSSISETAKYEGSSSLVGEEKLGEVEQHHQNLLSEACSSVTSEAYVSSPRKLISLRDPQGIEPPVAAENPQDEESFAVCKVSPTASHVVQTVADPISSKLAAIHHVSQAIKSLRWMRQLQSSEPKMVDHIGAVHDSLPSPINISVCACGDADCIEVCDLREWLPKSKLDHRLWKLVLLLGESYLALGQAYKEDGQLHQALKVVELACLVYGSMPQELEETRFISSMVGNPILHNKLNDKGEKFRSFNQDLKEVDLHCHDFSLDHYSSTYLFWAKTWTLVGDVYVEFHSIYGRETSEKAEKNFSTRELKISSEVVKEVNRLKKKLGQFKNCSACSLVNCSCQSDRANSGSSASSSRGESIVYSRKHNKKTHFKTSTVHSVSGDRDHDYNCPKIENGMGSNTRHLEPKRNARIHVNSKESQKFSVDNSEEVEDNVEACGNVLSATFQSHVNSKESQKVKTGGIFKYLGGPVSKGSECNLTAALSCYEEARKALGQLPAGSVELQSVMRKKGWVCNELGRWRLERKELKKAETAFAGAIDAFRAVSDHTNIILINCNLGHGRRALAEEIVSKIEDLKVHAIVQNAYYQALETAEVEYTESLRYYGAAKNELNGVAEDSIAVPGNLRTEVYTQLAHTYLRLGMLLARLDINEVHDIETLEDVGSVYTNSNNRGAKKGVKKHKISANDAIREALSIYESLGELRKQEAAYAYFQLACYQKNCSLKYLESDGWEKCLSKDDNSILQRVKQYASLAERNWQRAMEFYGPKTHPTMYLTILVERSALSLSLSSSLHSNAMLELAFSRMLEGRHISDADADSLKTKYSEIHLKFWNHLQTLLKKMVAMTLPTSSGKCSASQPHMPLNRSGEASRLRELYKMSLKSSDLRELHKMHTLWTSKSEC 1458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 46999549 47006158 - Maker00039759 Lcy10g2342 645853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2342 1458 MobiDBLite consensus disorder prediction 265 294 - -
Lcy10g2342 1458 PANTHER ERYTHROID DIFFERENTIATION-RELATED FACTOR 1 9 1440 - GO:0045893(PANTHER)
Lcy10g2342 1458 MobiDBLite consensus disorder prediction 937 965 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2342 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1418 . . . . . . . . . . . . . . Sed03g0679 . . Bhi04g02520 Tan11g0067 Cmetu03g1551 . Hepe02g3451 . Lcy10g2342 . . . . . . . . . . . . . . . Blo17g00153 . . Bda13g01444 . Bpe14g00411 . Bma02g00188 . . . . . . . . . . . . . . . . Cla11g00778 Cam11g0812 Cec11g0793 Cco11g0799 Clacu11g1046 Cmu11g0907 Cre11g1256 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011266 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 1 31