Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2347 ATGGCGGTTAGTGGGCCGGCTTCGAGTTCAGAGAGCTCCTGGAATGACTCTCGCAAGGGCATGTCGAGTGATAACATCAAGGGTTTGGTCTTAGCTTTGTCTTCCAGTTTCTTCATTGGTGCCAGCTTCATCGTCAAGAAGAAAGGTTTGAAGATAGCCGGCTCTTCTGGTGTTAGGGCAGGTTCTGGCGGTTATTCTTACTTGTATGAACCATTATGGTGGGTCGGCATGATAACCATGGTTGTAGGGGAAATTGCTAATTTTGCAGCTTATGCATTTGCACCAGCTATTTTGGTAACTCCGCTCGGTGCACTCAGTATAATTATCAGGCAAGAGGACGAACTGCTATTATGGTTTGCTGCTCTTGCTCATATTATATTAAGGGAGCGATTAAACATTTTTGGTATTCTTGGTTGTGTGTTATGTGTTGTGGGTTCGACAACAATTGTTCTGCATGCACCTCAAGAGCGTGAGATAGAATCTGTCAAGGAAGTATGGGATCTTGCGACAGAACCAGCTTTCCTTTTGTATGCTGCTTTGATGATAGCCACAACTCTCGTACTCATAATCCACTTTGTGCCTCGTTATGGGCAGACATATGTGATGGTTTACATAGGGGTTTGTTCTATTGTGGGCTCACTTTCGGTTATGAGTGTTAAAGCACTTGGAATTGCCCTGAAGTTAACATTTTCTGGAATGAATCAGTTAACATATCCTCAAACCTGGGCCTTCACAATGGTTGTCATTACTTGTGTGATCATTCAAATGAATTATCTAAATAAGGTTATTCATCAAAGGAGAAGATACTGTGGGTTTTGGATCTTGAAGCCTTCTAAGGGTTTCTCTTCTTCCTTTTATTTGCTTATCCTTTGCTTCCCTTTTCCCTCCCAGGGTACCTCAACATGTTCCTCTTTATGGAAGGTTAAAATTTCCAAGAAACTAGAGTTCTTTACCTGGAAAGTTTTGCATGGGCCTTTTGGGGTTGATTTGGCTCGTAATATTGATTGTTGCTCTATGTTTTGGGAAGTTCTTTTGAATCCCCCTTTTCGTGAGAAAGGAAGAGCCCAATGGCAAGCATTGTTTTTGCTAACTTGTGGGGTATTTGGCTTTAGAGAAATTGTAGAAATTTTAGAAGAGTGGAGAGATCCGGGAGGGAGCTTTGGGAGACGATTAGAATCAACTCGTCTTTAA 1191 42.07 MAVSGPASSSESSWNDSRKGMSSDNIKGLVLALSSSFFIGASFIVKKKGLKIAGSSGVRAGSGGYSYLYEPLWWVGMITMVVGEIANFAAYAFAPAILVTPLGALSIIIRQEDELLLWFAALAHIILRERLNIFGILGCVLCVVGSTTIVLHAPQEREIESVKEVWDLATEPAFLLYAALMIATTLVLIIHFVPRYGQTYVMVYIGVCSIVGSLSVMSVKALGIALKLTFSGMNQLTYPQTWAFTMVVITCVIIQMNYLNKVIHQRRRYCGFWILKPSKGFSSSFYLLILCFPFPSQGTSTCSSLWKVKISKKLEFFTWKVLHGPFGVDLARNIDCCSMFWEVLLNPPFREKGRAQWQALFLLTCGVFGFREIVEILEEWRDPGGSFGRRLESTRL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47028143 47036486 - Maker00039943 Lcy10g2347 645858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2347 396 MobiDBLite consensus disorder prediction 1 21 - -
Lcy10g2347 396 PANTHER UNCHARACTERIZED 22 262 IPR008521 GO:0015095(InterPro)|GO:0015693(PANTHER)|GO:0015693(InterPro)|GO:0016020(InterPro)|GO:0016020(PANTHER)
Lcy10g2347 396 Pfam Magnesium transporter NIPA 24 263 IPR008521 GO:0015095(InterPro)|GO:0015693(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2347 K22733 - - csv:101218991 442.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2347 Lcy-Chr10:47028143 Lcy11g1789 Lcy-Chr11:41683647 3.73E-109 dispersed
Lcy6g0585 Lcy-Chr6:5532203 Lcy10g2347 Lcy-Chr10:47028143 1.38E-116 transposed
Lcy10g1484 Lcy-Chr10:39027189 Lcy10g2347 Lcy-Chr10:47028143 5.87E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1400 . . . . . . . . . . . . . . Sed03g0686 . . Bhi04g02525 Tan11g0061 Cmetu03g1701 . Hepe02g3456 . Lcy10g2347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00786 Cam11g0818 Cec11g0800 Cco11g0805 Clacu11g1038 Cmu11g0899 Cre11g1262 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000165 6 10 5 4 5 5 8 5 6 6 6 5 4 5 6 7 5 7 8 5 6 6 6 5 5 6 6 21 17 4 200