Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2359 ATGTTCAAGAAGGCAGCTGAAGCGAAGCTGCACCAGAGATTATCTGGTGCAGACAGGAAGAAGCTGAAGAGGACTGTTAAAGAAAGGTTCGCCGGAGCTTCCGATGCCGATATTGACGTCTTGCTTCCTCCCAAGGTCGAGTTTACCGTTGCCAAGTTCCAAAATCGCGTCCACATATATAGTGTAGAAGGAGGCTTTCCTATGTTTTTCGATGTTGATGGAAGAGGATCTGAAATATTCCCCACAGTTTTTGCACTCTGGAAGGTACCAGAGTTGTTGCCTGCCTTTTTTTTGAAGGGGGGTGAGGTCTCCCGCTTTGTGATCGGAGGAGCAGACTTGATGTTCCCTGGTATTCATGTCCCTGCTGAAGGCCTGCCTTCATTTTTATCTGGGGAACCATGGGCTGTGAAAGTCCCTGGCAACACATCTCCTATTGCTGTTGGTGTTACCACCATGAGTAGTACTGAAGCATTAAAAGCGGGTTTACGTGGAAAAGCTTTGAGAATTCTACACTACTACAGGGATTCACTTTGGGAATCAGTAGAGGGTCATTATGTGCCGAATGCAGGATTTTTCGAAGATGTTGTATATGGAGATCCTGCGTTGGCATCATCTTCACAAACCGATGACTCTTGTGAAGGTACTGATGATGCTTCAACTTATGAACAGAATGACATCAGCGATAAAGGAGTTGGGGGATCTATTGATCAAACTAAAAGTGATGTTCTTGATGAGCCTGGTGCTGTTCTGACAGCACAGACAGATTCAACTACTGACGAAATCATTTCTGGTGTGAATGATTTGAAGGTTGTAAATGATATTTCCACTAAGGAATCAAATGTGCAACATACTCTATCAGCTGAAGATGTGGATATGCTTCTGGATAAATGTCTTCTTCAAGCCCTGCATACAACAGTGAAAGACAAAGATGTTCCACTTCCTGGAAGCACTCTATGGTCAAACCATGTATTGCCTTGTCGGCCTCCTGGCATGACGCTAGACATCAAGAAATCATCCCACAAGAAACTGTCGAAGTGGTTGCAAGCTAAATCCTCTACTGGATTGATCACAGTGAAAGAAGACAAGCATAAAAAGGAGACAGTTTTGTACTCTGTTAACCGCAAGCATCCAGACTACACGTCCTTTAAACCAGAGAAGCAACAAGTAGAGAAAATTGATCAGAGTGACAATCATGGTCCAAGAGAAAGTTCATCCAATAAAATGCTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCCATTTTTACCGCTGTGGGGGCTGACACTAGCAAACTTTACACTGCAGCAGAGGCCACTGACATTGTCTTCAAATATGTTGAGAAAGAAAAATTGGAAAAACCAACAGAAAAGTCCAGAGTGGTATTGGATGCAATATTATGCGATGCACTTTTCAAGGGGGCCATTAAAAAGGGAACAACATATCCAACAGAAATTCATAAAAAAGATATTGGCTCAACATTTATCAGCCGGATGCAACCCCATCACATTGTGACAAGAGGAAGTGAGTCTGTTGTTCGCAAAGGTGCATTAAAAACTATTCAAATAATGACTGAGCGACGTCAAGGAAATAAGAAAGTTACCAGACTTTCAGGGTTGGAAACATTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACGACGGTAGCAGAGTTGCCAGGTAAAAAAGGGTATGAAGTTTTGGTCCAAGGTGGAGTTATTGATGACTTGGCAAGACATCTGATCGAACAATATGGGATTCCAAAAAAGTACATTGAAGTACTTGATAAAACAAGGAAATGA 1833 42.55 MFKKAAEAKLHQRLSGADRKKLKRTVKERFAGASDADIDVLLPPKVEFTVAKFQNRVHIYSVEGGFPMFFDVDGRGSEIFPTVFALWKVPELLPAFFLKGGEVSRFVIGGADLMFPGIHVPAEGLPSFLSGEPWAVKVPGNTSPIAVGVTTMSSTEALKAGLRGKALRILHYYRDSLWESVEGHYVPNAGFFEDVVYGDPALASSSQTDDSCEGTDDASTYEQNDISDKGVGGSIDQTKSDVLDEPGAVLTAQTDSTTDEIISGVNDLKVVNDISTKESNVQHTLSAEDVDMLLDKCLLQALHTTVKDKDVPLPGSTLWSNHVLPCRPPGMTLDIKKSSHKKLSKWLQAKSSTGLITVKEDKHKKETVLYSVNRKHPDYTSFKPEKQQVEKIDQSDNHGPRESSSNKMLEVAEIYKPSVHVNPIFTAVGADTSKLYTAAEATDIVFKYVEKEKLEKPTEKSRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVRKGALKTIQIMTERRQGNKKVTRLSGLETFLLDAEALASELQKKCACSTTVAELPGKKGYEVLVQGGVIDDLARHLIEQYGIPKKYIEVLDKTRK 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47176957 47183264 - Maker00039506 Lcy10g2359 645870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2359 610 Pfam Translation initiation factor SUI1 521 598 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy10g2359 610 MobiDBLite consensus disorder prediction 378 400 - -
Lcy10g2359 610 Gene3D - 1 186 - -
Lcy10g2359 610 NCBIfam uncharacterized domain 2 69 175 IPR004521 GO:0003723(InterPro)
Lcy10g2359 610 CDD eIF2D_C 523 605 IPR039759 -
Lcy10g2359 610 FunFam eukaryotic translation initiation factor 2D 520 604 - -
Lcy10g2359 610 Pfam Pre-PUA-like domain 2 90 IPR041366 -
Lcy10g2359 610 MobiDBLite consensus disorder prediction 203 242 - -
Lcy10g2359 610 CDD eIF2D_N 9 81 IPR048247 -
Lcy10g2359 610 SUPERFAMILY eIF1-like 488 606 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy10g2359 610 Gene3D - 519 605 - -
Lcy10g2359 610 MobiDBLite consensus disorder prediction 378 406 - -
Lcy10g2359 610 ProSiteProfiles PUA domain profile. 93 174 - -
Lcy10g2359 610 ProSiteProfiles Translation initiation factor SUI1 family profile. 523 595 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy10g2359 610 MobiDBLite consensus disorder prediction 203 234 - -
Lcy10g2359 610 SUPERFAMILY PUA domain-like 103 179 IPR015947 -
Lcy10g2359 610 CDD PUA_eIF2d-like 92 174 IPR048248 -
Lcy10g2359 610 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 1 610 IPR039757 GO:0001731(InterPro)|GO:0001731(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)
Lcy10g2359 610 FunFam Eukaryotic translation initiation factor 2D isoform A 1 185 - -
Lcy10g2359 610 SUPERFAMILY SWIB/MDM2 domain 404 505 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2359 K15027 - - csv:101219792 1107.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34