Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2361 ATGGATTCAGTGGAGGCTATCGAGGAGTTGGCTCAGTTGTCGGACTCGATGCGGCAAGCTGCGGCTTTGCTCGCCGATGAGGACGTCGATGAAACTTCCACCTCCGGTGCTTCCTCTCGCAGGCCTTCCACTTTCCTCAACGTCGTGGCTCTGGGGAATGTGGGAGCTGGTAAATCTGCAGTATTAAATAGCTTGATTGGACATCCTGTTTTGCCTACTGGTGAAAATGGTGCTACTAGGGCCCCCATAAGCATTGATTTACATAGGGATGGCTCACTGAGCAGCAAATCAATTATCCTGCAGATTGACAATAAGTCTCAGCCTGTTTCTGCAAGTGCTTTGCGACATTCTCTACAGGACAGATTGAGTAAAGGTTCCTCTGGCAAGAGCCGAGATGAAATCTATTTGAAGCTTCGCACTAGTACAGCACCTCCGTTGAAATTGATCGATTTACCTGGGCTTGATCAGCGGAGCGTGAGTGAATCAATGATTAGTGAATATGCTGAGCACAATGATGCCATTTTGCTAGTCATTGTGCCTGCCTCTCAAGCAGTTGAGATTGCTTCTACTCGTGCCCTCAGACTGGCAAAGGAGTATGATGGTGAAGGGACTAGAACTATTGGGATAATTAGCAAAATAGATCAAGCTGCTTCAGATCAGAAATCTCTGGCTGCCGTTCAGGCTCTATTATTAAATCAAGGACCTTCAAGAGCTTCAGATATACCATGGGTTGCTTTAATTGGTCAATCTGTTTCAATTGCTTCTGCACAGTCTGGGTCTGTTGGCTCTGAAAATTCTTTGGAAACTGCCTGGAGGGCCGAGAGCGAAAGTCTAAAATCCATACTGACTGGAGCCCCACAAAGTAAACTGGGTAGAATTGCTTTGGTGGATGCTTTGGCTCATCAAATACGGAATCGTATGAAAGTCAGACTTCCAAACCTATTATCAGGGTTACAAGGAAAGTCTCAGATTGTTCAAGATGAGTTATCGAAGCTTGGTGACCAAATGGTGGAAAGTGCTGAAGGGACCAGAGCTGTAGCCTTGCAACTCTGCCGTGAATTTGAGGATAAGTTTCTTCAGCACATTGCAACTGGTGAAGGTGCTGGTTGGAAAATTGTTGCTAGTTTTGAGGGGAACTTTCCAAATAGAATCAAGCAGCTCCCTCTAGACAGACATTTTGACATTAACAATGTGAAGAGGATTGTGTTAGAAGCTGATGGTTATCAACCATATTTGATATCCCCTGAAAAGGGTTTGCGATCTCTAATAAAAGGTGTTTTAGAGCTTGCAAAAGAACCATCACGTCTCTGTGTCGATGAGTTTATTTATTCTGCTACTTATGGAGTTCTTGCTTGGCTGATAAAAAAGGTCCATCGTGTTCTAGTGGATATAGTTTCTGCTGCTGCAAATTCTACACCAGGTCTTGGAAGATACCCGCCTTTCAAGAGAGAGATTGTGGCCATCGCAAGTGCTGCATTAGATGGATTTAAGAATGAAGCGAAGAAAATGGTAGTTGCACTTGTTGACATGGAGCGAGCTTTTGTGCCTCCACAACATTTTATACGATTGGTTCAAAGAAGGATGGAGAGGCAGCGTCGAGAGGAGGAGGTGAAATACAAATCATCAAAGAAAGGTCAAGAGGCAGAGCAAGCAATATTAAACAGGGCAACTAGTCCTCAAACTAGTGGACAACAAAGTAGTGGAAGCCTGAAATCAATGAAGGAAAAACCAGGCAAAGAGGACAAAGAAGGACAGGAAACTTCTGGTTTGAAGACTGCGGGTCCAGAAGGGGAAATAACAGCAGGTTTTCTGTTAAAGAAAAGCGCTAAAACAAATGGATGGAGTAAAAGATGGTTTGTTCTGAATGAGAAGACGGGAAAGCTTGGTTACACTAAGAAGCAAGAGGAGAGACATTTCCGTGGTGTGATCAGTTTGGAGGAATGTAATATTGAAGAGGCTTCAGACGAGGAAGAAGCTCCTTCAAAGGGTTCGAAGGATAAGAAAGCTAATGGACCAGATTCTGGAAAAGGTCTTGTGTTCAAGATCACGAGCAAGGTTGCATATAAAACTGTTCTTAAAGCACATAACGCTGTTGTCTTAAAGGCTGAAAGTATGGCTGACAAGGTTGAATGGATGAATAAGATACGGAATGTTATTCAACCTTCCAGAGGACAGATGAGGGGGCCTGATGGTGGTCTTCCCATGCGGCAGAGTCTTTCGGATGGTTCTCTTGATACGATGGCTAGAAAACCTGTAGATCCTGAAGAAGAACTACGGTGGATGTCCCAAGAAGTACGTGGTTATGTTGAAGCTGTTTTAAACAGTTTGGCGGCCAATGTCCCAAAGGCGGTTGTCCTGTGCCAAGTTGAGAAAGCCAAGGAAGATATGCTAAATCAGTTGTATAGTTCGATCAGTGCTCAAAGCACTCCAAGGATAGAGGAGCTGCTTCTCGAAGATCACAATGTAAAGAATAAGAGAGAGCGCTGCCAAAAACAATCATCTCTTCTTGCTAAATTGCTACGTCAACTCAGCGTACATGACAACCGAGCGGCTGCTGCAGCCAACTGGTCTGACAGTGGCGCAGAAAGCAGTCCGAGAACAAGTGCTCCATCTTCAGGTGAAGAGTGGAAATCTGCCTTCGATGCTGCAGCTAATGGTCCTGCGAACTACAATCGATCTTCATCCAATGGTCATCATAGTCGACGTTACAGTGATCCAGATCAAAATGGGGATTTGAACTCACGTTCAAACTCTAACAGTCGCCGTACTCCGAACCGGATGCCTCCTCCCCCACCGCCATCTGCTTCTTCGGGTTCAAAATACTTCTAG 2829 44.86 MDSVEAIEELAQLSDSMRQAAALLADEDVDETSTSGASSRRPSTFLNVVALGNVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLHRDGSLSSKSIILQIDNKSQPVSASALRHSLQDRLSKGSSGKSRDEIYLKLRTSTAPPLKLIDLPGLDQRSVSESMISEYAEHNDAILLVIVPASQAVEIASTRALRLAKEYDGEGTRTIGIISKIDQAASDQKSLAAVQALLLNQGPSRASDIPWVALIGQSVSIASAQSGSVGSENSLETAWRAESESLKSILTGAPQSKLGRIALVDALAHQIRNRMKVRLPNLLSGLQGKSQIVQDELSKLGDQMVESAEGTRAVALQLCREFEDKFLQHIATGEGAGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEFIYSATYGVLAWLIKKVHRVLVDIVSAAANSTPGLGRYPPFKREIVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKYKSSKKGQEAEQAILNRATSPQTSGQQSSGSLKSMKEKPGKEDKEGQETSGLKTAGPEGEITAGFLLKKSAKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVISLEECNIEEASDEEEAPSKGSKDKKANGPDSGKGLVFKITSKVAYKTVLKAHNAVVLKAESMADKVEWMNKIRNVIQPSRGQMRGPDGGLPMRQSLSDGSLDTMARKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTPRIEELLLEDHNVKNKRERCQKQSSLLAKLLRQLSVHDNRAAAAANWSDSGAESSPRTSAPSSGEEWKSAFDAAANGPANYNRSSSNGHHSRRYSDPDQNGDLNSRSNSNSRRTPNRMPPPPPPSASSGSKYF 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47194246 47213498 + Maker00039314 Lcy10g2361 645872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2361 942 Coils Coil 822 842 - -
Lcy10g2361 942 Gene3D Dynamin, middle domain 338 557 - -
Lcy10g2361 942 FunFam Dynamin-2A 338 561 - -
Lcy10g2361 942 ProSiteProfiles GED domain profile. 758 851 IPR020850 -
Lcy10g2361 942 SMART PH_update 598 722 IPR001849 -
Lcy10g2361 942 ProSiteProfiles PH domain profile. 597 720 IPR001849 -
Lcy10g2361 942 SMART dynamin_3 7 254 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g2361 942 Gene3D - 44 327 IPR027417 -
Lcy10g2361 942 SMART GED_2 753 846 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g2361 942 MobiDBLite consensus disorder prediction 853 942 - -
Lcy10g2361 942 FunFam Dynamin-2B isoform A 44 327 - -
Lcy10g2361 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 321 IPR027417 -
Lcy10g2361 942 MobiDBLite consensus disorder prediction 573 587 - -
Lcy10g2361 942 MobiDBLite consensus disorder prediction 651 675 - -
Lcy10g2361 942 SUPERFAMILY PH domain-like 598 720 - -
Lcy10g2361 942 MobiDBLite consensus disorder prediction 857 874 - -
Lcy10g2361 942 MobiDBLite consensus disorder prediction 553 596 - -
Lcy10g2361 942 Pfam PH domain 601 719 IPR001849 -
Lcy10g2361 942 CDD DLP_1 48 312 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g2361 942 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 42 312 IPR030381 GO:0005525(InterPro)
Lcy10g2361 942 FunFam Dynamin-2A 590 724 - -
Lcy10g2361 942 Gene3D - 585 723 IPR011993 -
Lcy10g2361 942 MobiDBLite consensus disorder prediction 655 672 - -
Lcy10g2361 942 MobiDBLite consensus disorder prediction 909 923 - -
Lcy10g2361 942 FunFam Dynamin-2A 716 826 - -
Lcy10g2361 942 Pfam Dynamin central region 265 519 IPR000375 -
Lcy10g2361 942 Pfam Dynamin GTPase effector domain 756 840 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Lcy10g2361 942 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 71 80 IPR019762 -
Lcy10g2361 942 PANTHER DYNAMIN 31 842 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Lcy10g2361 942 MobiDBLite consensus disorder prediction 553 572 - -
Lcy10g2361 942 Pfam Dynamin family 48 212 IPR045063 -
Lcy10g2361 942 PRINTS Dynamin signature 182 200 IPR022812 -
Lcy10g2361 942 PRINTS Dynamin signature 70 87 IPR022812 -
Lcy10g2361 942 PRINTS Dynamin signature 201 217 IPR022812 -
Lcy10g2361 942 PRINTS Dynamin signature 45 63 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2361 K01528 - - csv:101220030 1598.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2361 Lcy-Chr10:47194246 Lcy9g0346 Lcy-Chr9:9425227 0 dispersed
Lcy10g2361 Lcy-Chr10:47194246 Lcy11g1830 Lcy-Chr11:42057820 3.35E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69