Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy10g2364 ATGAACCCTTCTCTTTTCCGCCTTCCCTTTTCGCTCCTCTTCTTCTTCAACCTCGCCACCGCCTGCCATGTCGGCGACCGAAACGCCCTTCTTGCTTTCAAATCCGCCATTACTGCCGACCCCTCCGGCATTTTAAGCTCCTGGAAGTCCGCCGTCGACTGCTGCACTTGGTCCGGAGTTACTTGCTTGCTCCCTAATCGCGTCACCAGTCTCAGCCTCTATGGCCAACTCGACCACCCCAACGGCTTCCTCTCCGGCACCATCTCCGATTCTCTCTCAAACCTCCCTTACTTGGACGGAATCTACCTCGTCAACCTTCGAAACATCTCCGGTCCTTTTCCACCTTCACTCTTCAAACTCCGCAAACTCCTCTACGTTTACATCGAGAACAACAAGCTTTCAGGCCCACTACCGGCCGCAATCGGAAACATGAGCCAACTCGAGGCACTCAGTCTTGAAGGTAACAGATTCACCGGTCCGATTCCGAGTTCCATTTCCAAATTGACTCGGTTGACTCAGCTCAAACTCGGCACCAACCTTCTCACTGGCTCCATACCGATTGGAATCCAGCAACTCAAAAGCCTGACGTTCCTCAGCCTCGAAAGGAACCGGTTCGCCGGTCCCGTTCCGGATTTTTGGGGCGGATTTCCGGAGTTAAGGATTCTCAGACTTTCCCACAATAAACTCACCGGCAACATTCCGCGCTCAATTTCAGCTCTGGCGCCGAAGCTCAGTTTCTTGGAGCTAGGGCACAATTTGCTGACAGGAACTATCCCTGATTTTCTCGGAAATTTTAGGGCACTGGATACTCTAGATCTCTCCTCCAATTACTTCTCTGGAGTTGTGCCGAAAAGCTTCAGGAATTTGACGAAAATATTCAATCTCGATCTATCTCGGAATTCGCTGGTGGATCCGTTTCCGGAGTTGTTCGTGAAAGGGATCGAGTCGCTGGATTTGTCGTACAACAAATTTCATCTCGGAAGAATTCCGAAATGGGTGACGTCGTCGCCGATAATCTACTCTCTGAAATTGGCGAAATGTGGGATCAAAATGAAGCTGGAGGATTGGAAGCCGAGCGAAACGTATTTCTACGATTACATTGATCTTTCGGAGAACGAGATTTCGGGCAGTCCGGTCGGGTTGTTGAACCGGACGGATTATTTGGTGGGATTTTGGAGCTCCGGGAACAAGTTGAATTTTAAGCTGCAGGATTTGAGGATTGTGAAGAGGTTGAAGTACTTGGATTTGTCGAGAAATTTGGTGTCCGGTAAGGTTCCCGGCGGCGTGGTGGGGCTTGAGAAACTGAACGTCAGCTACAATCATCTGTGCGGCCAGATTCCGGCGACGAAGTTCCCGGCGACGTCGTTTTTGGGGAATGATTGCTTGTGTGGCCCGCCGCTGCCGCCCTGCAAATGA 1416 51.06 MNPSLFRLPFSLLFFFNLATACHVGDRNALLAFKSAITADPSGILSSWKSAVDCCTWSGVTCLLPNRVTSLSLYGQLDHPNGFLSGTISDSLSNLPYLDGIYLVNLRNISGPFPPSLFKLRKLLYVYIENNKLSGPLPAAIGNMSQLEALSLEGNRFTGPIPSSISKLTRLTQLKLGTNLLTGSIPIGIQQLKSLTFLSLERNRFAGPVPDFWGGFPELRILRLSHNKLTGNIPRSISALAPKLSFLELGHNLLTGTIPDFLGNFRALDTLDLSSNYFSGVVPKSFRNLTKIFNLDLSRNSLVDPFPELFVKGIESLDLSYNKFHLGRIPKWVTSSPIIYSLKLAKCGIKMKLEDWKPSETYFYDYIDLSENEISGSPVGLLNRTDYLVGFWSSGNKLNFKLQDLRIVKRLKYLDLSRNLVSGKVPGGVVGLEKLNVSYNHLCGQIPATKFPATSFLGNDCLCGPPLPPCK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47222577 47223992 + Maker00039219 Lcy10g2364 645875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy10g2364 471 SUPERFAMILY L domain-like 51 426 - -
Lcy10g2364 471 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 55 312 - -
Lcy10g2364 471 PANTHER POLYGALACTURONASE INHIBITOR 1 189 470 IPR051848 -
Lcy10g2364 471 SMART LRR_typ_2 216 240 IPR003591 -
Lcy10g2364 471 SMART LRR_typ_2 265 288 IPR003591 -
Lcy10g2364 471 SMART LRR_typ_2 144 168 IPR003591 -
Lcy10g2364 471 SMART LRR_typ_2 192 215 IPR003591 -
Lcy10g2364 471 SMART LRR_typ_2 429 458 IPR003591 -
Lcy10g2364 471 Pfam Leucine rich repeat 242 302 IPR001611 GO:0005515(InterPro)
Lcy10g2364 471 Gene3D Ribonuclease Inhibitor 197 471 IPR032675 -
Lcy10g2364 471 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lcy10g2364 471 Gene3D Ribonuclease Inhibitor 24 188 IPR032675 -
Lcy10g2364 471 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Lcy10g2364 471 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Lcy10g2364 471 Pfam Leucine Rich Repeat 123 144 IPR001611 GO:0005515(InterPro)
Lcy10g2364 471 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy10g2364 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1691 . . . . . . . . . . . . . . Sed05g2505 . . Bhi04g02557 Tan11g0037 Cmetu03g0795 . Hepe02g3470 . Lcy10g2364 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00803 Cam11g0839 Cec11g0825 . Clacu11g1018 Cmu11g0881 Cre11g1284 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012402 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 0 1 1 26