Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0006 ATGAGATTATTGTTTCGCTGGTCTATGGAGAAGGAGAAAGATTTCCGCTCTATTCTGAAGGAAGAGCTTGTCGATCTGGTCATGGCTGTAGGGGCGGTCACTCATGGCGGTGGGGTGGGGTCAGGTTTGTCAAAAGCCTCCATAAAGATTGAGGGCGTAAAGGAGTTTGGTTACCGTGAAATGGCCCTAGCTACAAACAATTTTCATGATTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCACAGCTGTTGCTATCAAACGTGCACAGGAGGGCTCACTACAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTATTGTCAAGATTACATCACAGAAATCTCGTGGCTTTGATTGGATATTGTGATGAAGAAGGGGAGCAGATGTTGGTTTATGAGTTTATGTCAAAGGGCACGCTGAGGGATCACCTTTCTGTAAATTCTGCAGAACCGTTGAGTTTTGCCACAAGATTAAAAGCTGCACTGGGTGCAGCTAAGGGAATTCTGTACCTACACACGGAAGCTGATCCTCCAATATTCCACCGAGACATCAAGTCCAGCAACATATTATTAGACTCTAAATATATGGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTCTACCAGATACAGAAGGCGATGTGCCTGCTCATGTATCGACAGTAGTAAAAGGGACACCGCAAGAAGAGAAAGATACTGCTGGAGAAGAAGGGGTTCTTGATAAGAATAAAAAGTTACCCGTGAAAAGCATAGGCCTCGACCGAAGGTCTGATGAACAACTCTATAGAACTCCTGTTAGAACACTTGCATTCAGTAAGATGGGGCTGATTGCAACAATTAAGCTAGCACAAATATTTCAACATTTCATGGGTTATCTTGATCCAGAGTACTTCTTGACTCATAAATTAACCGATAAGAGTGATGTTTATAGTCTTGGTGTCGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAACAGTGCATATCAGTCTGGAAAAATTTTCTCGATAATTGATGGTCGACTGGGATCTTATCCCGCTGAATGTGTGGAAAGGTTTGTGACATTGGCTCTGAAGTGTTGCCAAGACGATACAGACGCACGTCCTTCAATGGCAGAAGTTGTTCGAACACTTGAAAATGTTTGGCTTATGCTGCCCGAATCTGATACGAAAATCGCAGAGCCTTTGAACACCGATGTCATAAAAGTTACCAGTTCCCCATCTTCATCATCCAACATGAATAACTACTACATATCAGAAGTCTCTGGCAGTGACCTTGTAAGTGGAGTAACTCCCACCATCACACCCAGATAG 1380 43.41 MRLLFRWSMEKEKDFRSILKEELVDLVMAVGAVTHGGGVGSGLSKASIKIEGVKEFGYREMALATNNFHDSTVVGQGGYGKVYKGILADSTAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLVYEFMSKGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYMAKVADFGLSRLAPLPDTEGDVPAHVSTVVKGTPQEEKDTAGEEGVLDKNKKLPVKSIGLDRRSDEQLYRTPVRTLAFSKMGLIATIKLAQIFQHFMGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNSAYQSGKIFSIIDGRLGSYPAECVERFVTLALKCCQDDTDARPSMAEVVRTLENVWLMLPESDTKIAEPLNTDVIKVTSSPSSSSNMNNYYISEVSGSDLVSGVTPTITPR 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 57262 65257 - Maker00005980 Lcy11g0006 645907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0006 459 Pfam Protein tyrosine and serine/threonine kinase 72 217 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g0006 459 ProSitePatterns Protein kinases ATP-binding region signature. 74 96 IPR017441 GO:0005524(InterPro)
Lcy11g0006 459 PANTHER RECEPTOR-LIKE PROTEIN 55 35 239 - -
Lcy11g0006 459 PIRSF ILK 260 413 - -
Lcy11g0006 459 PIRSF ILK 5 235 - -
Lcy11g0006 459 FunFam Leucine-rich repeat protein kinase family protein 40 143 - -
Lcy11g0006 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g0006 459 SUPERFAMILY Protein kinase-like (PK-like) 54 432 IPR011009 -
Lcy11g0006 459 Gene3D Phosphorylase Kinase; domain 1 42 143 - -
Lcy11g0006 459 ProSiteProfiles Protein kinase domain profile. 68 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0006 459 SMART serkin_6 68 405 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0006 459 Pfam Protein kinase domain 301 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0006 459 Gene3D Transferase(Phosphotransferase) domain 1 144 414 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0006 Lcy-Chr11:57262 Lcy11g0876 Lcy-Chr11:26002677 2.13E-75 dispersed
Lcy1g1635 Lcy-Chr1:16732750 Lcy11g0006 Lcy-Chr11:57262 2.75E-145 wgd
Lcy11g0006 Lcy-Chr11:57262 Lcy5g0015 Lcy-Chr5:386987 2.68E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65434 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0006 - - - 0.0