Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0017 ATGTGTTTGGTTTATTCTGTGCAGATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTGCAGGATCCAGCTGATGAGTCTGTTGACAAGTTAGCTGATAAAACTGAAAGTTTGTCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTTGAGGCTAGCTCCTTGAATGACGATGGTGCAGATGCCACGGAGGATTTGGAAGATCAAGCAGGGGAAAATGAAGAACGAGAGGGAATTGTTCTACAGTATCATTATCCGTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGGTTGATTTGGAGGTGAGTTTGGGATCTCAGATTGCGGAAATGGGAGAAAAACAAACGAGTGTAGAGGCCAAGCTGGACTTACAGTTCACGCTTGTGCGGGAGGAAATGAAATCGATGTTCATGCGATTGGAAGGGATCATGAATGTTGAAAAGGAGACACCCTCTTCGGAACGAACGATCACCGATAAAGGGAAGCGTATAATGGATGACGAATCCGTGTTGAAGGACCCTGAACCGCGAGAGAATGTTGAGAAGAAAGCCATGAGCAGTGAAGGAATTCAAGCACCTAGCAACCGTGAAGTGCCCCTGTTCGACATGCGATTAAGGAAGTTGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGTATGGGTTCATTAGTCGTATATATCCATATTTTGCCTCTAGCATTTACCTTGTAGTATATGGCATGATGCATCGGCAGCCAGATCATGTTATGGCCTTCTTATTGGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAGGCTGGTTTTGTTGCTCGTGTTGGCCGGAGGAACACTGGGACATGA 1194 44.14 MCLVYSVQIAPFDPTKKKKKKKVVLQDPADESVDKLADKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADATEDLEDQAGENEEREGIVLQYHYPWEGSDRDYEYEEVDLEVSLGSQIAEMGEKQTSVEAKLDLQFTLVREEMKSMFMRLEGIMNVEKETPSSERTITDKGKRIMDDESVLKDPEPRENVEKKAMSSEGIQAPSNREVPLFDMRLRKLELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYGFISRIYPYFASSIYLVVYGMMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 156841 166693 + Maker00005882 Lcy11g0017 645918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0017 397 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 18 383 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
Lcy11g0017 397 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 225 349 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0017 397 Pfam Domain found in IF2B/IF5 295 375 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0017 397 Gene3D - 222 382 - -
Lcy11g0017 397 MobiDBLite consensus disorder prediction 73 87 - -
Lcy11g0017 397 MobiDBLite consensus disorder prediction 54 69 - -
Lcy11g0017 397 MobiDBLite consensus disorder prediction 23 41 - -
Lcy11g0017 397 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 346 381 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0017 397 MobiDBLite consensus disorder prediction 20 93 - -
Lcy11g0017 397 SMART eIF2Bneu4 245 376 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy11g0017 397 FunFam Eukaryotic translation initiation factor 2 subunit 292 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0017 Lcy-Chr11:156841 Lcy11g0350 Lcy-Chr11:5888867 3.17E-153 dispersed
Lcy11g0017 Lcy-Chr11:156841 Lcy5g1296 Lcy-Chr5:30666580 3.02E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0017 K03238 - csv:101220978 295.434