Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0017 | ATGTGTTTGGTTTATTCTGTGCAGATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTGCAGGATCCAGCTGATGAGTCTGTTGACAAGTTAGCTGATAAAACTGAAAGTTTGTCAGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTTGAGGCTAGCTCCTTGAATGACGATGGTGCAGATGCCACGGAGGATTTGGAAGATCAAGCAGGGGAAAATGAAGAACGAGAGGGAATTGTTCTACAGTATCATTATCCGTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGGTTGATTTGGAGGTGAGTTTGGGATCTCAGATTGCGGAAATGGGAGAAAAACAAACGAGTGTAGAGGCCAAGCTGGACTTACAGTTCACGCTTGTGCGGGAGGAAATGAAATCGATGTTCATGCGATTGGAAGGGATCATGAATGTTGAAAAGGAGACACCCTCTTCGGAACGAACGATCACCGATAAAGGGAAGCGTATAATGGATGACGAATCCGTGTTGAAGGACCCTGAACCGCGAGAGAATGTTGAGAAGAAAGCCATGAGCAGTGAAGGAATTCAAGCACCTAGCAACCGTGAAGTGCCCCTGTTCGACATGCGATTAAGGAAGTTGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGTATGGGTTCATTAGTCGTATATATCCATATTTTGCCTCTAGCATTTACCTTGTAGTATATGGCATGATGCATCGGCAGCCAGATCATGTTATGGCCTTCTTATTGGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAGGCTGGTTTTGTTGCTCGTGTTGGCCGGAGGAACACTGGGACATGA | 1194 | 44.14 | MCLVYSVQIAPFDPTKKKKKKKVVLQDPADESVDKLADKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADATEDLEDQAGENEEREGIVLQYHYPWEGSDRDYEYEEVDLEVSLGSQIAEMGEKQTSVEAKLDLQFTLVREEMKSMFMRLEGIMNVEKETPSSERTITDKGKRIMDDESVLKDPEPRENVEKKAMSSEGIQAPSNREVPLFDMRLRKLELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTYGFISRIYPYFASSIYLVVYGMMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 156841 | 166693 | + | Maker00005882 | Lcy11g0017 | 645918 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0017 | 397 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR | 18 | 383 | IPR045196 | GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER) | |
Lcy11g0017 | 397 | SUPERFAMILY | Translation initiation factor 2 beta, aIF2beta, N-terminal domain | 225 | 349 | IPR016189 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0017 | 397 | Pfam | Domain found in IF2B/IF5 | 295 | 375 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0017 | 397 | Gene3D | - | 222 | 382 | - | - | |
Lcy11g0017 | 397 | MobiDBLite | consensus disorder prediction | 73 | 87 | - | - | |
Lcy11g0017 | 397 | MobiDBLite | consensus disorder prediction | 54 | 69 | - | - | |
Lcy11g0017 | 397 | MobiDBLite | consensus disorder prediction | 23 | 41 | - | - | |
Lcy11g0017 | 397 | SUPERFAMILY | Zinc-binding domain of translation initiation factor 2 beta | 346 | 381 | IPR016190 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0017 | 397 | MobiDBLite | consensus disorder prediction | 20 | 93 | - | - | |
Lcy11g0017 | 397 | SMART | eIF2Bneu4 | 245 | 376 | IPR002735 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy11g0017 | 397 | FunFam | Eukaryotic translation initiation factor 2 subunit | 292 | 382 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0017 | Lcy-Chr11:156841 | Lcy11g0350 | Lcy-Chr11:5888867 | 3.17E-153 | dispersed | |
Lcy11g0017 | Lcy-Chr11:156841 | Lcy5g1296 | Lcy-Chr5:30666580 | 3.02E-44 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0017 | K03238 | - | csv:101220978 | 295.434 |