Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0028 ATGGCAGCCTCTTGTTTTCACAAGACCTTCAAAATGGCCATCATAATATTGGCCTTGGTTTTGATGGGCGCCGCAGGCAGCTCCTCTTCTCAGCTCTCCCCAAATTTTTACCATAACAAGTGCCCTCAGCTCCTCACCGCCGTTAGATCCATCCTTAAATCTCAAATCTCAAAGGAACGACGCATGGGAGCTTCTCTCCTTCGTCTCCACTTCCACGATTGCTTTGTCAACGGATGCGACGCGTCTGTGTTGCTAGAGGACCATGGGTCATTCCTTGGAGAGCAAACGGCACCTCCCAACAACAACTCACTCAGAGGTTTCAATGTGATCGATAAAATCAAGTCTAGAGTTGAGAAGTTTTGTCCTGGCGTGGTGTCGTGCGCGGACATCTTGACCATCGCTGCTCGTGATTCTGTTGCATTGCTTGGAGGGCCGTATTGGAATGTTAAACTTGGGCGAAGAGACTCGAAAACAGCAAGCTTTTCTGATGCCAGCGGCGGAGTTCTTCCTTCACCGGACTCCACTCTATCCGTTCTTATCTCGAGATTTAAAGATCAGGGCCTTTCTGTTACCGACTTGGTTGCTCTCTCTGGAGCGCACACGATCGGGCTAGCACGATGCGGCACGTTCAGAAGACGCATATACAGCAAGAGCAATATCGACGCTGCGTTTGCAAAGAAGAGACAGCAGCAGTGTCCGAGAAGGGAGGACTCGGGCGGCAACAATCTTGCTCCATTCGACATCCAAACGCCAATGGTTTTCGACAACAAATACTTCGACAACCTTATTGGGAAGAAAGGTCTGCTGAATTCGGATCAAGTGCTGTTTTCCGGCGGCTCCACGGACTCGTTGGTTAGAAAGTACAGCAGAAGCTCGGGGGCCTTCGATCGAGACTTTGTCAGAGCGATGATTAAGATGGCAGATATCAAGCCGCTCACTGGCTCCAGCGGAGAGATTAGAAAAGTCTGCGGAAGGCCCAATTAA 984 50.2 MAASCFHKTFKMAIIILALVLMGAAGSSSSQLSPNFYHNKCPQLLTAVRSILKSQISKERRMGASLLRLHFHDCFVNGCDASVLLEDHGSFLGEQTAPPNNNSLRGFNVIDKIKSRVEKFCPGVVSCADILTIAARDSVALLGGPYWNVKLGRRDSKTASFSDASGGVLPSPDSTLSVLISRFKDQGLSVTDLVALSGAHTIGLARCGTFRRRIYSKSNIDAAFAKKRQQQCPRREDSGGNNLAPFDIQTPMVFDNKYFDNLIGKKGLLNSDQVLFSGGSTDSLVRKYSRSSGAFDRDFVRAMIKMADIKPLTGSSGEIRKVCGRPN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 282475 283923 - Maker00005933 Lcy11g0028 645929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0028 327 FunFam Peroxidase 35 177 - -
Lcy11g0028 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Lcy11g0028 327 PANTHER PEROXIDASE 72-RELATED 17 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 Gene3D Peroxidase, domain 2 170 306 - -
Lcy11g0028 327 FunFam Peroxidase 170 306 - -
Lcy11g0028 327 CDD secretory_peroxidase 31 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy11g0028 327 SUPERFAMILY Heme-dependent peroxidases 31 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 Gene3D - 35 323 - -
Lcy11g0028 327 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Lcy11g0028 327 ProSiteProfiles Plant heme peroxidase family profile. 31 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0028 327 Pfam Peroxidase 48 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0028 Lcy-Chr11:282475 Lcy8g1698 Lcy-Chr8:43551438 1.53E-154 dispersed
Lcy11g0028 Lcy-Chr11:282475 Lcy11g0029 Lcy-Chr11:297195 1.41E-83 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0028 K00430 - mdm:103418409 429.483