Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0029 GGATGTGATGCGTCGGTGCTGCTGGATGACACGTCCAACTTCACAGGGGAAAAGACGGCAATCCCAAATAAAGATTCGCTGAGAGGTTTCGAAGTGATCGACAGTATCAAAACACTGGTGGAGGCGAGCTGCCCTTCTGTGGTTTCTTGCGCTGATATTCTCTCCATTGCAGCCCGGGACTCGGTGGTTGCAGTAAGCGCTGCTGCTGCTGCTTCTGCTTCTGCTTCTGCTTCTTCACTTGGTGGGCCTTCGTGGGTTGTTGGGCTTGGCAGGAGAGACTCGACCACAGCCAGCTTCGACACCGCCAACAATGACCTTCCATCTCCCTTCCTCGACCTCCCCGACCTCGTCTCTGCCTTCTCCAACAAAGGCTTCAACACCAAAGAATTGGTCGCCCTCTCCGGATCTCACACAATAGGCCAAGCCAGGTGCGCAATGTTCCGAGTAAGGGCCCATAACGAAACCAACATCGATTCGGAGTTGGCGGCTTCTTTAAGATCCAACTGCCCTCTGTCCGGCGACGACGACAAGCTTTCATCTTTGGACGTCGACACCCCTTCCAACTTCGACAACGCTTATTTCAAGAACTTGGTCCAGAACAAAGGGGTTCTTCATTCCGACCAAGCCCTCTTCAACAACGCCTCTGCCGACTCTCATGTCACCTCTTACTCCTCCGACTCTTCTGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTTAAGATGTCTAACCTCAGCCCACTCACCGGAACTACCGGTCAGATTCGCTCCGACTGCCGCAAAATCAATTGA 789 53.74 GCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDSIKTLVEASCPSVVSCADILSIAARDSVVAVSAAAAASASASASSLGGPSWVVGLGRRDSTTASFDTANNDLPSPFLDLPDLVSAFSNKGFNTKELVALSGSHTIGQARCAMFRVRAHNETNIDSELAASLRSNCPLSGDDDKLSSLDVDTPSNFDNAYFKNLVQNKGVLHSDQALFNNASADSHVTSYSSDSSAFFSDFAAAMVKMSNLSPLTGTTGQIRSDCRKIN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 297195 298148 - Maker00005969 Lcy11g0029 645930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0029 262 PANTHER PEROXIDASE 72-RELATED 1 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 FunFam Peroxidase 107 241 - -
Lcy11g0029 262 ProSiteProfiles Plant heme peroxidase family profile. 1 262 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 ProSitePatterns Peroxidases proximal heme-ligand signature. 129 139 IPR019793 -
Lcy11g0029 262 CDD secretory_peroxidase 1 261 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy11g0029 262 PRINTS Plant peroxidase signature 236 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 PRINTS Plant peroxidase signature 28 41 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 PRINTS Plant peroxidase signature 47 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 PRINTS Plant peroxidase signature 180 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 PRINTS Plant peroxidase signature 196 213 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 Gene3D Peroxidase, domain 2 107 241 - -
Lcy11g0029 262 SUPERFAMILY Heme-dependent peroxidases 1 262 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 PRINTS Haem peroxidase superfamily signature 48 65 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 PRINTS Haem peroxidase superfamily signature 129 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy11g0029 262 Gene3D - 1 259 - -
Lcy11g0029 262 Pfam Peroxidase 1 226 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0029 Lcy-Chr11:297195 Lcy7g1485 Lcy-Chr7:25733852 3.82E-90 dispersed
Lcy11g0028 Lcy-Chr11:282475 Lcy11g0029 Lcy-Chr11:297195 1.41E-83 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0029 K00430 - csv:101221157 362.844