Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0042 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCAAATTCCCATCCTTCTTTCACTTTCTCCACTCATCCTTTCATGACTACTTCTTACTCTGATCTTCTCGCCTCCGGCACCAACGATCCCCCTTCCTCTGCCGCTGCTCTCCGGGGCTCCGGCACCGGAGTTCCCAAGTTCAAATCCCTCCCCCCTCCTTCTCTGCCTCTCTCTCCGCCTCCTCTCTCTCCTTCTTCCTTTTTCGCCATTCCTCCTGGCCTCAGTCCGGCCGAGCTCCTTGATTCCCCTGTTCTACTCAGTGCTTCTCATGTTCTGCCGTCGCCGACCACCGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCGGGGTATAATCAGCAGAGCATCAAAGAAGAGAATAAGTTCTTGTCTAACTTCTCTTTTCAAACTCAATCGTCTAAGCCGCCGCCGACATCTTTTCAGCCTTCATCCACCACAGCTCCGACGACTCAGGGATGGAGTTTCCAAGAACAGGGAAAGAAACAGGACGGATTTTTGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCAGAGCTTCTCGCCGGAATATGGGGTTGTGCAAAACCAGAGCCAGAACAACGGCGGCGGGGAGTTTCAGTCCGACTACGGCAACAATTACCCTCAACAATCTCAGACGTTGAATCGGAGGTCCGATGACGGCTACAACTGGAGAAAATACGGCCAGAAACAGGTCAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACGAAGAAAAAGGTCGAAAAATCCTTAGACGGACAGATCACAGAGATCGTTTACAAAGGCAGCCATAACCACCCGAAGCCCCAATCCACGAGGAGGTCGTCCTTGTCGTCGGCCGGTTCTTCCCACGCCATGGCGGCTTCAAATCCGGCCGCCAACGACATGGGGGACCAGTCATTCACAACCCAAGGAAGCGGCCAATTCGACGGCGTCGCAACGCCGGAGAATTCCTCGATTTCAATCGGCGACGACGAATTCGATCGGAGCTCTCAGAAGAGCAAATCCGGAGGGGACGATTTCGATGAGGACGAACCAGAGGCGAAGAGATGGCGAAGGGATGGTGACAACAGCGAAGGGATTTCTGCAGCTGGTAGCCGGACCGTGAGAGAGCCGAGAGTCGTCGTTCAAACCACCAGCGACATCGACATTCTCGATGACGGTTACCGGTGGAGAAAGTACGGCCAGAAAGTGGTGAAAGGAAACCCGAATCCTAGGAGTTACTACAAATGCACAAACCCAGGATGCCCAGTAAGAAAGCATGTAGAGAGAGCGTCACACGATCTAAGGGCAGTGATCACCACCTACGAAGGCAAGCACAACCACGACGTCCCACCGGCACGTGGCAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCGCAGAGCGAGCCACCGGCCGCCGCAATCCGCCCATCGGCGATGACCCATCAGTCAAACAACGGCGGCAACAACAACAACAACAACCTTCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGAGAACCAAATGCCATTCACACTGGAAATGGTGCAAAATCCGAATGGATTTTCATTCCCGGAATTTGGAAACTCCATGGGAATGGGATCCTTCATGAACCAAACACAATCCAACGACAATTTGTTCAGTAGAGCCAAAGAAGAGCCAAGAGATCACGACACGTTCTTCCAATCTCTCTTATGTTGA 1752 52.85 MASSSGSLDTSANSHPSFTFSTHPFMTTSYSDLLASGTNDPPSSAAALRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKFLSNFSFQTQSSKPPPTSFQPSSTTAPTTQGWSFQEQGKKQDGFLSEKNMVKPEFGSMQSFSPEYGVVQNQSQNNGGGEFQSDYGNNYPQQSQTLNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHAMAASNPAANDMGDQSFTTQGSGQFDGVATPENSSISIGDDEFDRSSQKSKSGGDDFDEDEPEAKRWRRDGDNSEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPQSEPPAAAIRPSAMTHQSNNGGNNNNNNLLQGLRLQQSSENQMPFTLEMVQNPNGFSFPEFGNSMGMGSFMNQTQSNDNLFSRAKEEPRDHDTFFQSLLC 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 418245 420539 + Maker00005830 Lcy11g0042 645943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0042 583 Gene3D WRKY domain 220 293 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 SMART WRKY_cls 408 467 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 SMART WRKY_cls 233 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 FunFam WRKY transcription factor 33 395 461 - -
Lcy11g0042 583 SUPERFAMILY WRKY DNA-binding domain 400 468 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 Pfam WRKY DNA -binding domain 409 466 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 ProSiteProfiles WRKY domain profile. 403 468 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 139 506 IPR044810 GO:0003700(InterPro)
Lcy11g0042 583 FunFam WRKY transcription factor 224 293 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 31 46 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 345 380 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 196 233 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 459 490 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 280 391 - -
Lcy11g0042 583 Gene3D WRKY domain 395 461 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 MobiDBLite consensus disorder prediction 288 344 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 102 258 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 31 74 - -
Lcy11g0042 583 ProSiteProfiles WRKY domain profile. 234 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 SUPERFAMILY WRKY DNA-binding domain 232 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy11g0042 583 MobiDBLite consensus disorder prediction 102 174 - -
Lcy11g0042 583 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2040 Lcy-Chr10:44502823 Lcy11g0042 Lcy-Chr11:418245 1.82E-77 dispersed
Lcy11g0042 Lcy-Chr11:418245 Lcy8g1705 Lcy-Chr8:43605441 1.68E-100 dispersed
Lcy11g0042 Lcy-Chr11:418245 Lcy6g1902 Lcy-Chr6:39836153 1.93E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19070 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0042 K13424 - csv:101207158 957.977