Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0042 | ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCAAATTCCCATCCTTCTTTCACTTTCTCCACTCATCCTTTCATGACTACTTCTTACTCTGATCTTCTCGCCTCCGGCACCAACGATCCCCCTTCCTCTGCCGCTGCTCTCCGGGGCTCCGGCACCGGAGTTCCCAAGTTCAAATCCCTCCCCCCTCCTTCTCTGCCTCTCTCTCCGCCTCCTCTCTCTCCTTCTTCCTTTTTCGCCATTCCTCCTGGCCTCAGTCCGGCCGAGCTCCTTGATTCCCCTGTTCTACTCAGTGCTTCTCATGTTCTGCCGTCGCCGACCACCGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCGGGGTATAATCAGCAGAGCATCAAAGAAGAGAATAAGTTCTTGTCTAACTTCTCTTTTCAAACTCAATCGTCTAAGCCGCCGCCGACATCTTTTCAGCCTTCATCCACCACAGCTCCGACGACTCAGGGATGGAGTTTCCAAGAACAGGGAAAGAAACAGGACGGATTTTTGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCAGAGCTTCTCGCCGGAATATGGGGTTGTGCAAAACCAGAGCCAGAACAACGGCGGCGGGGAGTTTCAGTCCGACTACGGCAACAATTACCCTCAACAATCTCAGACGTTGAATCGGAGGTCCGATGACGGCTACAACTGGAGAAAATACGGCCAGAAACAGGTCAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAATTGCCCAACGAAGAAAAAGGTCGAAAAATCCTTAGACGGACAGATCACAGAGATCGTTTACAAAGGCAGCCATAACCACCCGAAGCCCCAATCCACGAGGAGGTCGTCCTTGTCGTCGGCCGGTTCTTCCCACGCCATGGCGGCTTCAAATCCGGCCGCCAACGACATGGGGGACCAGTCATTCACAACCCAAGGAAGCGGCCAATTCGACGGCGTCGCAACGCCGGAGAATTCCTCGATTTCAATCGGCGACGACGAATTCGATCGGAGCTCTCAGAAGAGCAAATCCGGAGGGGACGATTTCGATGAGGACGAACCAGAGGCGAAGAGATGGCGAAGGGATGGTGACAACAGCGAAGGGATTTCTGCAGCTGGTAGCCGGACCGTGAGAGAGCCGAGAGTCGTCGTTCAAACCACCAGCGACATCGACATTCTCGATGACGGTTACCGGTGGAGAAAGTACGGCCAGAAAGTGGTGAAAGGAAACCCGAATCCTAGGAGTTACTACAAATGCACAAACCCAGGATGCCCAGTAAGAAAGCATGTAGAGAGAGCGTCACACGATCTAAGGGCAGTGATCACCACCTACGAAGGCAAGCACAACCACGACGTCCCACCGGCACGTGGCAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCGCAGAGCGAGCCACCGGCCGCCGCAATCCGCCCATCGGCGATGACCCATCAGTCAAACAACGGCGGCAACAACAACAACAACAACCTTCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGAGAACCAAATGCCATTCACACTGGAAATGGTGCAAAATCCGAATGGATTTTCATTCCCGGAATTTGGAAACTCCATGGGAATGGGATCCTTCATGAACCAAACACAATCCAACGACAATTTGTTCAGTAGAGCCAAAGAAGAGCCAAGAGATCACGACACGTTCTTCCAATCTCTCTTATGTTGA | 1752 | 52.85 | MASSSGSLDTSANSHPSFTFSTHPFMTTSYSDLLASGTNDPPSSAAALRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKFLSNFSFQTQSSKPPPTSFQPSSTTAPTTQGWSFQEQGKKQDGFLSEKNMVKPEFGSMQSFSPEYGVVQNQSQNNGGGEFQSDYGNNYPQQSQTLNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVEKSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHAMAASNPAANDMGDQSFTTQGSGQFDGVATPENSSISIGDDEFDRSSQKSKSGGDDFDEDEPEAKRWRRDGDNSEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPQSEPPAAAIRPSAMTHQSNNGGNNNNNNLLQGLRLQQSSENQMPFTLEMVQNPNGFSFPEFGNSMGMGSFMNQTQSNDNLFSRAKEEPRDHDTFFQSLLC | 583 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 418245 | 420539 | + | Maker00005830 | Lcy11g0042 | 645943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0042 | 583 | Gene3D | WRKY domain | 220 | 293 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | SMART | WRKY_cls | 408 | 467 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | SMART | WRKY_cls | 233 | 291 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | FunFam | WRKY transcription factor 33 | 395 | 461 | - | - | |
Lcy11g0042 | 583 | SUPERFAMILY | WRKY DNA-binding domain | 400 | 468 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | Pfam | WRKY DNA -binding domain | 409 | 466 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | Pfam | WRKY DNA -binding domain | 234 | 290 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | ProSiteProfiles | WRKY domain profile. | 403 | 468 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 139 | 506 | IPR044810 | GO:0003700(InterPro) | |
Lcy11g0042 | 583 | FunFam | WRKY transcription factor | 224 | 293 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 31 | 46 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 345 | 380 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 196 | 233 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 459 | 490 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 280 | 391 | - | - | |
Lcy11g0042 | 583 | Gene3D | WRKY domain | 395 | 461 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 288 | 344 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 102 | 258 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 31 | 74 | - | - | |
Lcy11g0042 | 583 | ProSiteProfiles | WRKY domain profile. | 234 | 292 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | SUPERFAMILY | WRKY DNA-binding domain | 232 | 292 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 102 | 174 | - | - | |
Lcy11g0042 | 583 | MobiDBLite | consensus disorder prediction | 60 | 74 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g2040 | Lcy-Chr10:44502823 | Lcy11g0042 | Lcy-Chr11:418245 | 1.82E-77 | dispersed | |
Lcy11g0042 | Lcy-Chr11:418245 | Lcy8g1705 | Lcy-Chr8:43605441 | 1.68E-100 | dispersed | |
Lcy11g0042 | Lcy-Chr11:418245 | Lcy6g1902 | Lcy-Chr6:39836153 | 1.93E-76 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19070 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0042 | K13424 | - | csv:101207158 | 957.977 |