Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0059 ATGCCATTCGGCTCGCTTGCGCGGGCCGAGCTCGGTCACCTCCTCTCGGTCCCCAATGTCGCTAGCCGCCCCGGTTTCGCCTGGTTTGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCAGCATCGGAGGCGGTGTGGCTAGCACCACACCGGTGTGCAGGTTTTCTCCTTTGCAGGCCACGTCTTCCCCCTCATCTACAAATTTACCGTTGGTGGCACGTGAAGGTCAGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATAATGATACAAACGTAGTGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTGTGCAATGAATTATGGACTCCTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTTCTTCCCGATATTAGGGTAAGTAGAGGTCCATCAGGTCCCATCGGTAGCTTTATAAGGGCGTTGAGCAAAGAAAAGGAGTTTTTGCTGCTGTATTTGGGTGGAGAACCAAGAGTTTTTGGCGAAAACGTTCAAGAATTTCTACAAGGGGTAAAGGCCATTGCAGAGCGAATCAACAAAAATCTCTTCAACACAGAGATGTCGTCGATTGACAAGGCCGAACTGGTCTGCGTCACCGGCGCCAGTGGCTGTATCGGATCCTGGCTCGTTCACCTCCTCCTCCTTCGTGGCTACTCTGTTCACGCCACCGTCCAAAATCTCAAGGATGAGAAAGAAACCAAGCATCTGGAAGATTTAGAAGGAGCGGATGCTCGTCTTCGTCTCTTCCAAATCGATCTCCTCGATTACGACTCCATCGTCCCCGCCGTCACTGGTTGCGCCGGCGTCTTCCACCTCGCGTCTCCCTGCATTGTCGATCCTGTAGAAGATCCTGAGAGAGATTTATTGGATCCGGCCATCAAAGGAACCATCAACGTCCTCACGGCGGCTAAGGAGGCTGGGGTACAACGCGTAGTGGTAACTTCTTCTATCTCCGCCATGATTCCGAACCCTCACTGGCCGGCGAATGTTGTAAAGAACGAAGAATGCTGGACCGATATTGATTACTGCAAACAAAACGGGCTGTGGTATTCGGTTTCAAAAACTCTAGCAGAAAAGGCTGCTTGGGATTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATCAACCCAGGCACAGTGATGGGCCCTGTGTTTCCTCCCAGAATTAATGCAAGCATGCAAATGCTTTTAAAACTTCTCGAGGGGTGTAGTGAGACATTCGGGGACGTGTTTATCGGTGTAGTGCACTTTAAAGATGTTGCATTAGCACACATTTTGGTCTATGAAAACAAAGCAGCTACAGGAAGGCACTTTTGTGCCGAGGCCATAGCTCGTTACTCTGACTATGTCGCAAAGGTCGCTGAACTCTTTCCTCAATATAAGGTGCCCAGGTCGGTAGAAGATACACAACCTGATTTGGTGAGAGCAAAAGATGGAGCTAAGAAGTTGATGAACCTGGGGCTGGAATTCATCCCAATGGAAGAAATCCTCAAGGACGCCGTTGAGTATTTTAAAAAGAATGGATACGTTTCCTGA 1689 49.85 MPFGSLARAELGHLLSVPNVASRPGFAWFVPKRLRIPKNPRSMSSIGGGVASTTPVCRFSPLQATSSPSSTNLPLVAREGQYRDKAGYLILVTLWIRPALYNDTNVVIQRVHVVDMRVGVSCAMNYGLLSMRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIRVSRGPSGPIGSFIRALSKEKEFLLLYLGGEPRVFGENVQEFLQGVKAIAERINKNLFNTEMSSIDKAELVCVTGASGCIGSWLVHLLLLRGYSVHATVQNLKDEKETKHLEDLEGADARLRLFQIDLLDYDSIVPAVTGCAGVFHLASPCIVDPVEDPERDLLDPAIKGTINVLTAAKEAGVQRVVVTSSISAMIPNPHWPANVVKNEECWTDIDYCKQNGLWYSVSKTLAEKAAWDFAKEKGLDVVVINPGTVMGPVFPPRINASMQMLLKLLEGCSETFGDVFIGVVHFKDVALAHILVYENKAATGRHFCAEAIARYSDYVAKVAELFPQYKVPRSVEDTQPDLVRAKDGAKKLMNLGLEFIPMEEILKDAVEYFKKNGYVS 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 580076 588153 + Maker00005873 Lcy11g0059 645960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0059 562 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 247 553 IPR050425 GO:0016616(PANTHER)
Lcy11g0059 562 CDD FR_SDR_e 247 539 - -
Lcy11g0059 562 FunFam Cinnamoyl-CoA reductase 1 240 562 - -
Lcy11g0059 562 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 246 556 IPR036291 -
Lcy11g0059 562 Gene3D - 236 562 - -
Lcy11g0059 562 Pfam NAD dependent epimerase/dehydratase family 247 488 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0059 Lcy-Chr11:580076 Lcy3g1996 Lcy-Chr3:47089779 1.35E-91 dispersed
Lcy11g0059 Lcy-Chr11:580076 Lcy11g0062 Lcy-Chr11:601583 2.45E-77 proximal
Lcy11g0059 Lcy-Chr11:580076 Lcy11g0060 Lcy-Chr11:589499 1.03E-73 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0059 - - - 0.0