Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy11g0062 | ATGTCGACCGTCTGCGTCACCGGCGGCAGCGGCTGCATCGGATCCTGGCTCGTCCGCCTCCTCCTCCTCCGTGGCTACTCCGTTCACGCCACCGTCCAAAATCTCAAGGACGAAAAGGAAACGAAGCATCTGGAGGATTTAGAAGGAGCGGCTAATCGTCTTCGTCTCTTCCAAATCGATCTCCTCGATTATGTCTCCATCGTCTCCGCCGTCAGCGGCTGCGCCGGCGTCTTCCACCTGGCGTCTCCGTGCACCGTCGATCGTGTTGCAGATCCTGAGAAGGAGCTACTGGAGCCGGCGATCAGAGGAACGATCAACGTCCTGACGGCGGCTAAGGAGGCTGGAGTTCAACGCGTAGTGGTAACTTCATCGGTCACCGCCATTGTTCTGAACCCTCGCTGGCCGGCGGATGTTCCAATCAATGAAGATTGCTGGAGCGATGTCGATTACTGCAGGGAAAATGGCATGTTAGCTATGCTTGAGTTTGATCTTACATAA | 498 | 56.02 | MSTVCVTGGSGCIGSWLVRLLLLRGYSVHATVQNLKDEKETKHLEDLEGAANRLRLFQIDLLDYVSIVSAVSGCAGVFHLASPCTVDRVADPEKELLEPAIRGTINVLTAAKEAGVQRVVVTSSVTAIVLNPRWPADVPINEDCWSDVDYCRENGMLAMLEFDLT | 165 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 601583 | 602535 | - | Maker00005985 | Lcy11g0062 | 645963 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy11g0062 | 165 | Gene3D | - | 1 | 160 | - | - | |
| Lcy11g0062 | 165 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 3 | 154 | IPR050425 | GO:0016616(PANTHER) | |
| Lcy11g0062 | 165 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 1 | 154 | IPR036291 | - | |
| Lcy11g0062 | 165 | Pfam | NAD dependent epimerase/dehydratase family | 4 | 127 | IPR001509 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g0062 | Lcy-Chr11:601583 | Lcy6g1116 | Lcy-Chr6:12641990 | 2.75E-44 | dispersed | |
| Lcy11g0059 | Lcy-Chr11:580076 | Lcy11g0062 | Lcy-Chr11:601583 | 2.45E-77 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy11g0062 | - | - | - | 0.0 |