Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0078 ATGAACAACCCATCAGAGGAAAATGTTGAAACAGAAGGCATCTCTTCAAAGAATGCGAAGAACGAGTCGTACAGAAGTGTGCTTATGTTGGCTTACCAAAGTCTAGGAGTTGTCTATGGCGATCTCAGCACCTCCCCTCTGTATGTTTACAAAACCACCTTTTCTGGGAAATTGAGTCTCCATGAGAATGATGAAGAGATTTATGGAGTACTATCCTTCATCTTCTGGACATTTACACTCATTGCTCTCTTCAAATACGTTTTCATTGTCATGTCAGCCGAAGATAATGGTGAAGGGGGTACCTTTGCACTGTACTCTCTTCTCTGCAGGCATGCTAGACTATGCATTCTACCGAATCAAGAGCCTGTCGATGAAAAGTTATCTGCGTATGACATGAAGGGAATCTCGGAGACGAGAGCAAGTGCTGCTCTGAAGTCTTTTTTTCAGCTGCATCCGTCTTGTCGAAAAGGTTTTTTGGTGTTTGTGCTCTTTGGAACCTCCATGGCTATTGGGGACGGAGTGCTCACTCCTGCAATATCAGTTCTTTCAGCAGTCTCAGGAGTCAAACATAAGATCACTGGACTGCATGAGAATTATGTTGTTTTAATCTCGTGCGTCATCTTAGTTGGACTGTTCTCCCTTCAGCATCGTGGAACACACAAAGTCGCTTTCATGTTTGCTCCAATCATCATGGCATGGCTTATTTCTATCAGCGTTATCGGAATGTATAATATTATCAAGTGGAATCCACGTATATATCGCGCCCTCTCTCCAGTTTATATGCTGAAGTTCCTTAGAAGCACAGGCGTCAAAGGTTGGATTTCATTAGGCGGAGTCGTTCTCTCTATAACAGGTGTGGAGGCAATGTTTGCTGATTTAGGCCACTTCTCTTCGCTTTCGATCAAGTTTGCTTTCACATTTCTTGTATATCCCTCCTTGATCCTTGCTTATCTTGGTGAGGCTGCATTCCTCTCCAAGCACCATGAAGATATTCAGAGAAGCTTCTACAAAGCAATACCTGAAGCGGTGTTTTGGCCGGTGTTCGTCGTGGCCACTTTTGCTTCTGTCATAGGAAGTCAGGCCGTGATTTCGGCTACATTCTCCCTCGTAAACCAGTGCTGTGCTCTGAATTGCTTCCCCCATGTGAAAATTAAGCACACTTCAAACCAAATATATGGGCAGATTTATATCCCAGAAGTTAATTGGATGCTAATGTGCCTTTGTTTAGCTGTGACAATTGGCTTGAGAGACACAAACATGATAGGCCATGCATATGGGCTGGCAGTCACCATTGTTATGTTTGTCTCAACTTGCTTGATGGCACTTGTGATAATAATTGTTTGGAAGCAGAGGTTGATCAATGCCGTAGGGTTTTTCTTGTTTTTCGGGTCGATCGAACTACTTTACATCTCAGCATCAATTAGCAAAGTTCACGAAGGCGGGTGGATCCCCATCGTGCTTTCTGCGCTCTTTATGTGTTCGATGTATACATGGTACTACGGGACAATGAAGAAACACGAATACGATGATGAGAACAAAGTGTCAATGAATAGGATACTTTCTTCAGGTCCCAGCCTCGGCATAGTACGCGTGCCCGGAATTGGACTCATATACACTAATCTGGTCACTGGTGTTCCTGCTGTTTTTGGTCACTTTGTAACCACTTTGCCTGCATTTCATCAAGTGCTTGTCTTTGTTTGCATAAAGTATGTTCAAGTTCCCCATATTGACGAAGAAGATCGTTTGCTCATTACAAGGGTCGGGCCGAAAGAATGCAACATGTTTCGGTGCATCGTGAGGTATGGTTATCGGGATTTGCTACAAGAAAACTACAATTTCGAGACCCGATTGGTGTTTTCTCTAGTACAGTATGTAGAAACAGAAGATCACTTTTGGAAACCAATGACACAAGTCTCTAGAGGATGTGAAAATTCAGAAGAAGAACCTTGTGAGTATGAACCATTGGAGCAGGATTTCACAAGCTCAAATATGTTGCAGTCTTCCTACAAATATCAAGCAACGGATACTGCAGTCGACGACGACGATCGGGAGAAGTCTATACATAACGAGGAAGCAATGCAGATACTGAGAGCGAAGGAATCGGGAATCACGTACATTTTCGGACATTGCTCGGTCAAGGCCAAGAAATCGTCCTCCATTTTGAAGAAGTTGGCCATTGATATTGTGTATGCTTTTTTGAACCAGAATTGCAGGGAGCCTGAGGTTCTTCTGAATGTGCCTCACACTTCTCTCTTGGAAGTTGGCATGGTATATTATGTATAG 2283 43.32 MNNPSEENVETEGISSKNAKNESYRSVLMLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHENDEEIYGVLSFIFWTFTLIALFKYVFIVMSAEDNGEGGTFALYSLLCRHARLCILPNQEPVDEKLSAYDMKGISETRASAALKSFFQLHPSCRKGFLVFVLFGTSMAIGDGVLTPAISVLSAVSGVKHKITGLHENYVVLISCVILVGLFSLQHRGTHKVAFMFAPIIMAWLISISVIGMYNIIKWNPRIYRALSPVYMLKFLRSTGVKGWISLGGVVLSITGVEAMFADLGHFSSLSIKFAFTFLVYPSLILAYLGEAAFLSKHHEDIQRSFYKAIPEAVFWPVFVVATFASVIGSQAVISATFSLVNQCCALNCFPHVKIKHTSNQIYGQIYIPEVNWMLMCLCLAVTIGLRDTNMIGHAYGLAVTIVMFVSTCLMALVIIIVWKQRLINAVGFFLFFGSIELLYISASISKVHEGGWIPIVLSALFMCSMYTWYYGTMKKHEYDDENKVSMNRILSSGPSLGIVRVPGIGLIYTNLVTGVPAVFGHFVTTLPAFHQVLVFVCIKYVQVPHIDEEDRLLITRVGPKECNMFRCIVRYGYRDLLQENYNFETRLVFSLVQYVETEDHFWKPMTQVSRGCENSEEEPCEYEPLEQDFTSSNMLQSSYKYQATDTAVDDDDREKSIHNEEAMQILRAKESGITYIFGHCSVKAKKSSSILKKLAIDIVYAFLNQNCREPEVLLNVPHTSLLEVGMVYYV 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 795800 800406 - Maker00005996 Lcy11g0078 645979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0078 760 Pfam K+ potassium transporter integral membrane domain 30 521 IPR053951 -
Lcy11g0078 760 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 17 760 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy11g0078 760 Pfam K+ potassium transporter C-terminal domain 532 758 IPR053952 -
Lcy11g0078 760 NCBIfam potassium uptake protein 30 760 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0078 Lcy-Chr11:795800 Lcy7g1064 Lcy-Chr7:11363119 6.59E-272 dispersed
Lcy11g0078 Lcy-Chr11:795800 Lcy10g1936 Lcy-Chr10:43445714 5.04E-280 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0078 K03549 - csv:101222845 1359.74