Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0082 ATGGCGAAAACGACGGCGCTTTCTTGGTCGAGAAGTAAGTTCGTGATCGGAAAGGGCTCGTTCGGGACGGTCACCGTCGGAATCCGGAAATCGGACGGTCAGATTTTCGCGGTGAAGTCCGTCGAACAGAGTGTTGGATTCCGGCGCCAAATTCAATGTTTAGAGAACGAAATTCGGATTCTCCGATCGTTGGATTCGCCCTACGTCGTGTGGTTTCTCGGCGATGACGTTTCAGACGAGTCTCCGACGACGTCGTTTCGGAATCTGCACATGGAGTATTTGCCTGGTGGCACTGTCGCCGATGACCCCACCGGCGCCGGCGATGAGGCGCTTTTACGGGCGAGGACGCGGTGTATTGTTTCGGCTCTGAGTTATGTTCATTCGAAGGGAATTGTCCATTGTGATGTTAAGGGGAGGAACGTTTTGATCGGAATGGATCCGGGTTTTGTGAAATTGGCCGATTTCGGCTCTGCGATTGAAATCGCCGCCGCCGGCGACGGCGACACGTGTCGGGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTTCGAGGGGAATTTCAGGGGCCGGAATCGGACGTTTGGTCGGTTGGGTGTACGGTCATTGAAATGGTCACCGGAAAACCAGCGTGGGAAGATTTCGGGGCCGATACGCTGAGACGAATCGGCTTTTCCGACGAGTTGCCGGAGTTTCCGACTGGGTTGTCGGAACTCGGCCGGGATTTTCTCCGGAAGTGTCTCAGAAGGGATCCGAGTGAGCGGTGGAGCTGCGATCGGCTGCTGCAGCATCCATTTTTGGCGGCCTCGCCGGAGATTGCCGGCGGGAATTCCCCCCGGTGCGTGCTTGACTGGGTCAACGCCGAGTTCGACGATGACGAGGAAGAAATCCCCATCTCCGGCGAATCCTCTGGCTCCGGCGGCCGGGAAAGTGAGATCTCCGGCAAGGGCAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGGTGGGCGCCGGTGAGAGGGTTCTCTAGTGAAGCGGCGGCGACGGCGACGGCGGCGAGCTCAGAAGAAGGGGAAGGGGTAGAATGGGAATATGGGAATTCGAGAGGGGCAGAAGAGGAAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAAAGGACAATCACGGAAAACTGGGAGCCGAATATTCAAATCATGGCGGTCTGGACATTCCGGAGCGGCCACGTAATAATTGCGGCGGCGGCGGTGACGGTGGCAGTAGCGGTGGCGGTGGCGGTGGATTAAGTTTCCGGCGGTGGGGGTCTGAAAGATACGTTAACTCCTTATCAATGGACTTTGTCTCCCAAAGGGAATCCATTATTTTGACTAATTTTAATTACGTTTGA 1389 56.16 MAKTTALSWSRSKFVIGKGSFGTVTVGIRKSDGQIFAVKSVEQSVGFRRQIQCLENEIRILRSLDSPYVVWFLGDDVSDESPTTSFRNLHMEYLPGGTVADDPTGAGDEALLRARTRCIVSALSYVHSKGIVHCDVKGRNVLIGMDPGFVKLADFGSAIEIAAAGDGDTCRAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLRRIGFSDELPEFPTGLSELGRDFLRKCLRRDPSERWSCDRLLQHPFLAASPEIAGGNSPRCVLDWVNAEFDDDEEEIPISGESSGSGGRESEISGKGRIGKLSTSEWPNWESDGWAPVRGFSSEAAATATAASSEEGEGVEWEYGNSRGAEEEMEGTSSEYSEFVKDNHGKLGAEYSNHGGLDIPERPRNNCGGGGDGGSSGGGGGGLSFRRWGSERYVNSLSMDFVSQRESIILTNFNYV 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 822781 825325 - Maker00005851 Lcy11g0082 645983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0082 462 SUPERFAMILY Protein kinase-like (PK-like) 15 273 IPR011009 -
Lcy11g0082 462 ProSiteProfiles Protein kinase domain profile. 10 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0082 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g0082 462 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0082 462 SMART serkin_6 10 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0082 462 CDD STKc_MAPKKK 8 268 - -
Lcy11g0082 462 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Lcy11g0082 462 Gene3D Transferase(Phosphotransferase) domain 1 7 290 - -
Lcy11g0082 462 MobiDBLite consensus disorder prediction 296 330 - -
Lcy11g0082 462 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 269 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy11g0082 462 MobiDBLite consensus disorder prediction 401 428 - -
Lcy11g0082 462 FunFam Serine threonine protein kinase putative 7 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0082 Lcy-Chr11:822781 Lcy1g0456 Lcy-Chr1:4000937 4.45E-64 dispersed
Lcy11g0082 Lcy-Chr11:822781 Lcy8g1430 Lcy-Chr8:40953190 7.85E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65435 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0082 - - - 0.0