Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0082 | ATGGCGAAAACGACGGCGCTTTCTTGGTCGAGAAGTAAGTTCGTGATCGGAAAGGGCTCGTTCGGGACGGTCACCGTCGGAATCCGGAAATCGGACGGTCAGATTTTCGCGGTGAAGTCCGTCGAACAGAGTGTTGGATTCCGGCGCCAAATTCAATGTTTAGAGAACGAAATTCGGATTCTCCGATCGTTGGATTCGCCCTACGTCGTGTGGTTTCTCGGCGATGACGTTTCAGACGAGTCTCCGACGACGTCGTTTCGGAATCTGCACATGGAGTATTTGCCTGGTGGCACTGTCGCCGATGACCCCACCGGCGCCGGCGATGAGGCGCTTTTACGGGCGAGGACGCGGTGTATTGTTTCGGCTCTGAGTTATGTTCATTCGAAGGGAATTGTCCATTGTGATGTTAAGGGGAGGAACGTTTTGATCGGAATGGATCCGGGTTTTGTGAAATTGGCCGATTTCGGCTCTGCGATTGAAATCGCCGCCGCCGGCGACGGCGACACGTGTCGGGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTTCGAGGGGAATTTCAGGGGCCGGAATCGGACGTTTGGTCGGTTGGGTGTACGGTCATTGAAATGGTCACCGGAAAACCAGCGTGGGAAGATTTCGGGGCCGATACGCTGAGACGAATCGGCTTTTCCGACGAGTTGCCGGAGTTTCCGACTGGGTTGTCGGAACTCGGCCGGGATTTTCTCCGGAAGTGTCTCAGAAGGGATCCGAGTGAGCGGTGGAGCTGCGATCGGCTGCTGCAGCATCCATTTTTGGCGGCCTCGCCGGAGATTGCCGGCGGGAATTCCCCCCGGTGCGTGCTTGACTGGGTCAACGCCGAGTTCGACGATGACGAGGAAGAAATCCCCATCTCCGGCGAATCCTCTGGCTCCGGCGGCCGGGAAAGTGAGATCTCCGGCAAGGGCAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGGTGGGCGCCGGTGAGAGGGTTCTCTAGTGAAGCGGCGGCGACGGCGACGGCGGCGAGCTCAGAAGAAGGGGAAGGGGTAGAATGGGAATATGGGAATTCGAGAGGGGCAGAAGAGGAAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAAAGGACAATCACGGAAAACTGGGAGCCGAATATTCAAATCATGGCGGTCTGGACATTCCGGAGCGGCCACGTAATAATTGCGGCGGCGGCGGTGACGGTGGCAGTAGCGGTGGCGGTGGCGGTGGATTAAGTTTCCGGCGGTGGGGGTCTGAAAGATACGTTAACTCCTTATCAATGGACTTTGTCTCCCAAAGGGAATCCATTATTTTGACTAATTTTAATTACGTTTGA | 1389 | 56.16 | MAKTTALSWSRSKFVIGKGSFGTVTVGIRKSDGQIFAVKSVEQSVGFRRQIQCLENEIRILRSLDSPYVVWFLGDDVSDESPTTSFRNLHMEYLPGGTVADDPTGAGDEALLRARTRCIVSALSYVHSKGIVHCDVKGRNVLIGMDPGFVKLADFGSAIEIAAAGDGDTCRAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLRRIGFSDELPEFPTGLSELGRDFLRKCLRRDPSERWSCDRLLQHPFLAASPEIAGGNSPRCVLDWVNAEFDDDEEEIPISGESSGSGGRESEISGKGRIGKLSTSEWPNWESDGWAPVRGFSSEAAATATAASSEEGEGVEWEYGNSRGAEEEMEGTSSEYSEFVKDNHGKLGAEYSNHGGLDIPERPRNNCGGGGDGGSSGGGGGGLSFRRWGSERYVNSLSMDFVSQRESIILTNFNYV | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 822781 | 825325 | - | Maker00005851 | Lcy11g0082 | 645983 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0082 | 462 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 273 | IPR011009 | - | |
Lcy11g0082 | 462 | ProSiteProfiles | Protein kinase domain profile. | 10 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g0082 | 462 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 131 | 143 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g0082 | 462 | Pfam | Protein kinase domain | 15 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g0082 | 462 | SMART | serkin_6 | 10 | 268 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g0082 | 462 | CDD | STKc_MAPKKK | 8 | 268 | - | - | |
Lcy11g0082 | 462 | ProSitePatterns | Protein kinases ATP-binding region signature. | 16 | 39 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g0082 | 462 | Gene3D | Transferase(Phosphotransferase) domain 1 | 7 | 290 | - | - | |
Lcy11g0082 | 462 | MobiDBLite | consensus disorder prediction | 296 | 330 | - | - | |
Lcy11g0082 | 462 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 4 | 269 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Lcy11g0082 | 462 | MobiDBLite | consensus disorder prediction | 401 | 428 | - | - | |
Lcy11g0082 | 462 | FunFam | Serine threonine protein kinase putative | 7 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0082 | Lcy-Chr11:822781 | Lcy1g0456 | Lcy-Chr1:4000937 | 4.45E-64 | dispersed | |
Lcy11g0082 | Lcy-Chr11:822781 | Lcy8g1430 | Lcy-Chr8:40953190 | 7.85E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65435 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0082 | - | - | - | 0.0 |