Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0083 ATGTCGGTCTCCGTCGCGGTTTCGAATTCGCCGGGGTTTTCCCCTTCGTCGTCGATGTTCTGCAACAAGACGTCGATCATTTCTCCGGCGCCGGAGGCTCTGACGCTGACGTTGGCCCATTTGAAATCGTCTCAGGCTTCGTCGTCTTGCTCGTCCTCGCCTTCTTCCCCTTCTTCCCCTTTCCGGCTTAGGTTTCCCAAGCCCCCTTCTGGCCTCTCCGCAGCCGTGGCGGTGGCTTCCACTTCTTCTCCGTCGTCGGCCTCGTCCAACGCGATCTTGAAGAGGAAGAGACCGGCGAGGTTGGATATTCCCTTGACGCCGTTGAGTTTCGGCGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTCGTGGAGGCTGAGAGAGATGGGTACTCTGTGTATTGCAAGAGAGGGAGGAGGAGAATCTCCATGGAAGATCGGTATTCCGCCGCCGTTGATCTTCGAGGCGATTCCAAAGAGGCGTTTTTTGGTGTGTTTGATGGACATGGTGGAGCTAAGGCTGCAGAATTTGCAGCCAAAAACTTGGAGAAGAACGTGTTGAATGAACTGGAAAGAATGGCTGATAACGAGACAGATTTCGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCCGATTTCCTCAAGGAGGATCAGCGCGGTGGCTCTTGTTGTGTGACAGCCTTGATCAAGAGAGGCAACCTCGTCGTCTCCAACGCCGGTGACTGCCGTGCCGTTCTCAGCAGCAAGGGCGTCGCCGAAGCCATCACCTCCGACCACCGTCCGTCCCGGGAAGACGAAAGGCACCGAATCGAGTCGAGGGGTGGATATGTTGATCTGTGCAATGGCGTTTGGAGAGTGCAGGGATCTCTGGCTGTGACAAGAGGAATTGGTGATGCTCACCTCAAACAATGGGTGATAGCGGAGCCGGAGACGAGGGCGATTCGGATCGAGCCTCGACACGAGTTCGTGATCTTGGCCTCCGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCATTGTGTGTAGGGATTGAGAAGCCAGAGCCATTGGAGGCCTGTAAAAAGCTTGTGGAGCTATCACTTTCAAGGGGCTCAGTGGATGACATTAGTGTAGTACTAATTCAATTGGCTAACTTCATTTAA 1170 54.27 MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRLRFPKPPSGLSAAVAVASTSSPSSASSNAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRISMEDRYSAAVDLRGDSKEAFFGVFDGHGGAKAAEFAAKNLEKNVLNELERMADNETDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKRGNLVVSNAGDCRAVLSSKGVAEAITSDHRPSREDERHRIESRGGYVDLCNGVWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIRIEPRHEFVILASDGLWETVSNQEAVDIAHPLCVGIEKPEPLEACKKLVELSLSRGSVDDISVVLIQLANFI 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 843135 844951 - Maker00005755 Lcy11g0083 645984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0083 389 SMART PP2C_4 124 383 IPR001932 -
Lcy11g0083 389 Pfam Protein phosphatase 2C 136 378 IPR001932 -
Lcy11g0083 389 CDD PP2Cc 131 385 IPR001932 -
Lcy11g0083 389 ProSitePatterns PPM-type phosphatase domain signature. 163 171 IPR000222 GO:0043169(InterPro)
Lcy11g0083 389 Gene3D - 132 388 IPR036457 -
Lcy11g0083 389 FunFam probable protein phosphatase 2C 25 124 388 - -
Lcy11g0083 389 SUPERFAMILY PP2C-like 131 386 IPR036457 -
Lcy11g0083 389 PANTHER PROTEIN PHOSPHATASE 119 383 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy11g0083 389 SMART PP2C_SIG_2 140 385 IPR001932 -
Lcy11g0083 389 Coils Coil 180 200 - -
Lcy11g0083 389 ProSiteProfiles PPM-type phosphatase domain profile. 131 385 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0083 Lcy-Chr11:843135 Lcy7g1000 Lcy-Chr7:10507846 5.50E-127 dispersed
Lcy11g0083 Lcy-Chr11:843135 Lcy13g0137 Lcy-Chr13:1323540 1.65E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0083 K17506 - csv:101207841 655.595