Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0110 ATGGCCAACGACGTCGTTTTTCTTTTTCTCCTTCTCATTTTTGCTTATTTGATTTGGTTTCATTTCCTCGCCCGGAAGCTGACCGGTCCAACAGTCTGGCCGCTCATCGGCAGCCTACCGGCTCTCATCTCGAACCGCCGGAGACTCCACGACTGGATGGCCGGAAACCTCCGCTCCACAGGCGGCGCCGCCACCTACCAAACCTGCACGGTGGCGCTTCCTTTCATCGCCAAAAGACAAGGGTTCTACACCGTCACGTGCCACCCGAGGAACATCGAGCACGTGCTCCGAACCCGGTTCGAGAATTACCCGAAAGGACCGGACTGGCAGGCGGCTTTTCACGATCTGTTGGGGCAAGGGATTTTCAACAGCGACGGCGAGATTTGGCTGATTCAGCGGAAGACGGCGGCGCTGGAGTTCACGACGAGGACGCTCCGGCAGGCGATGGACCGGTGGGTGAACCGGACGATAAGGACGCGACTGTGGTGCATTTTGGAGAAGGCGGCGGAGTACAAAACGGCGGTGGATTTGCAGGATTTGCTGCTCCGATTGACTTTTGATAACATTTGTGGGCTGACTTTCGGGAAAGATCCTCAAACTTTGTCGCCGGAATTGCCTGCAAATCCCTTCGCTCTGGCGTTCGATACCGCCACTGAGGCCACTCTTCAGCGCCTTCTTTACCCTGGTCTTTTATGGAGGTTGGAGAAGCTTCTGGGCATTGGAATGGAAAGCGAGTTAAAGAAGAGTCTGAAAATAGTAGAAGAATACATAAACGACGCCGTTGCAGCCCGTAAAGAATCTCCCTCCGACGACTTATTATCCCGCTTCATGAAGAAACGCGGCGGCGACGGCGACGGCGACGGAAACCGCTTCTCCGCCGCCGTGCTCCACCGCATCGCCTTAAACTTCGTCCTCGCCGGCCGGGACACGTCCTCCGTGGCGCTGACGTGGTTCTTCTGGCTCGTAATGAACCACCCGCACGTGGAGGCCAAGATCCTCGCCGAAATCTCAAGGGTCCTCCGCCAGACACGTGGCGACGATCCGGGCCGTTGGATCGAAGAGCCGTTGGTGTTCGACGAGGCCGATAAATTGGTGTATTTGAAAGCCGCGTTGGCCGAAACGCTGCGTTTATACCCGTCCGTACCGCAGGATTTCAAATACGTGGTGGCTGATGACGTGTTGCCAGATGGGACGTTCGTGCCGGCCGGTTCGACCGTGACGTATTCGATTTATTCGGTCGGGAGGATGAAGAGCATTTGGGGGGAGGACTGTGCGGAGTTTAAACCGGACCGGTGGCTGTCGCCGGCCGGAGACCGGTTCGAGGGGCCGAAGGATGCGTACAAATTCGTGGCGTTTAACGCCGGACCGAGGACTTGTTTGGGGAAGGATTTGGCGTATTTGCAAATGAAGTCCGTCGCCTCCGCCGTGCTCCTCCGGTACCGGCTGGCGCCGGTTCCCGGTCACCGGGTCGAACAAAAAATGTCGCTTACTCTGTTCATGAAGAATGGGCTTCGTGTTTACTTGCATCCTCGCCGGCTCGGTTAG 1545 57.02 MANDVVFLFLLLIFAYLIWFHFLARKLTGPTVWPLIGSLPALISNRRRLHDWMAGNLRSTGGAATYQTCTVALPFIAKRQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILEKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPANPFALAFDTATEATLQRLLYPGLLWRLEKLLGIGMESELKKSLKIVEEYINDAVAARKESPSDDLLSRFMKKRGGDGDGDGNRFSAAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEAKILAEISRVLRQTRGDDPGRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCAEFKPDRWLSPAGDRFEGPKDAYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLG 514
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 1201933 1204769 - Maker00005762 Lcy11g0110 646011
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0110 514 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PANTHER CYTOCHROME P450 17 504 - -
Lcy11g0110 514 SUPERFAMILY Cytochrome P450 19 511 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 FunFam Cytochrome P450 21 513 - -
Lcy11g0110 514 Pfam Cytochrome P450 84 501 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 Gene3D Cytochrome P450 23 513 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy11g0110 514 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy11g0110 514 CDD CYP86A 69 504 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0110 Lcy-Chr11:1201933 Lcy13g0700 Lcy-Chr13:10104949 6.12E-238 dispersed
Lcy11g0110 Lcy-Chr11:1201933 Lcy12g1638 Lcy-Chr12:36741963 3.79E-246 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0110 K15401 - csv:101214516 956.051