Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0152 ATGCACTATCGACCAAAAGGTCAGAGGGCCAATCCCGTGACTAAGATAGTCGTGCCAGAGGTCACACAGCAGCTTCCTGTGGAGGCTCTAGTGGATCATCAAATTAGATTGGTTGAGCAAATGGAGGAGGAAATGCCCATTTTGAGAACTGAGCATTGGCATGAAGTAGTTAAGACGCCAATCTCTGCTAAGAAGAGGAATATTTCTATTCCCAATTCCCCTGATGTAAAATGTTGCAGCTCTAGCTGTGCGTTTTCCAGATTGGAACACAGTAATTTGGAGTCGTTAAATCGTTCCAAGTCGACTATGAAGCTTGGTGGATTGATATTTTTCTATGCCATAGCTATAGTAGTTGAGATTATTGGTGGTTTGAGAGCCAACAGTCTGGCTGTAATGACAGATGCAGCTCACTTGCTCAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGGGTTTCGGGCTGGGACGCAACACCGCAACATTCCTTCGGGTATAATCGTCTTGAAGTTCTAGGTGCCCTTGTGTCTGTGCAGCTTATATGGCTGATTTCTGGGGTGTTAATCTACGAGGCAGTCGACCGAATTCTTGGCCAAAAGACAAAGGTTAACGGATTCATTATGTTCGCCATTGCAGCTTTCGGGTTCATCCTTAACTTGTTTATGGTCATGTGGCTAGGTCATAGCCACTCTCATTCTCATGGTCATTCTCATTCTCATTCTTGTCATCATAGCCATCACTCTCATCAGAATCACTTGGATCATGACACTGACCATGAGAAGGAGGAGATTTACACAATGACAAAACAAGAGGGTGTTCCTTTGGGGCCGAAGGACAATGGTTCAATGTTGAACATAAATCTCCAAGGTGCTTACCTTCATGTCATCACTGATATGATCCAATCTATTGGAGTGATGATTGCTGGAGCCGTTCTATGGGTTAAACCCGAGTGGACCGTCGTCGATTTGATCTGCACTCTTGTGTTTTCTGTTCTTGCTATGGCTACCACTTTCTCCATGCTTAGACATACTGCTGGTATATTGATGGAAGGTACACCCAGGGAGGTCAATATTGAGAGCCTAGAAAATGACCTCAAGGGCATAAAAGGAGTCCTTGCTTTGCACGACTTGCATATTTGGTCGATAACGGTCGGAAAAGTCGTGTTGTCTTGTCACGTTGTTGCCGAACACGGAGTTCCTGCTAGGGAGATCATTTCTAAGATTAAGAACCTCTCTCTGAAGAACACCAGTGGTGTTCTTCTATGTAATGAACTTTCTGTTCTGATATCCCCATATTTTCACTATGGGCTTGTAATGTTATCTGTGTGTGCATAA 1338 44.1 MHYRPKGQRANPVTKIVVPEVTQQLPVEALVDHQIRLVEQMEEEMPILRTEHWHEVVKTPISAKKRNISIPNSPDVKCCSSSCAFSRLEHSNLESLNRSKSTMKLGGLIFFYAIAIVVEIIGGLRANSLAVMTDAAHLLSDVAGFSVSLFAVWVSGWDATPQHSFGYNRLEVLGALVSVQLIWLISGVLIYEAVDRILGQKTKVNGFIMFAIAAFGFILNLFMVMWLGHSHSHSHGHSHSHSCHHSHHSHQNHLDHDTDHEKEEIYTMTKQEGVPLGPKDNGSMLNINLQGAYLHVITDMIQSIGVMIAGAVLWVKPEWTVVDLICTLVFSVLAMATTFSMLRHTAGILMEGTPREVNIESLENDLKGIKGVLALHDLHIWSITVGKVVLSCHVVAEHGVPAREIISKIKNLSLKNTSGVLLCNELSVLISPYFHYGLVMLSVCA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1662602 1666989 - Maker00005773 Lcy11g0152 646053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0152 445 Pfam Cation efflux family 109 350 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g0152 445 NCBIfam cation diffusion facilitator family transporter 109 419 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy11g0152 445 MobiDBLite consensus disorder prediction 237 258 - -
Lcy11g0152 445 SUPERFAMILY Cation efflux protein transmembrane domain-like 102 351 IPR027469 -
Lcy11g0152 445 Gene3D Cation efflux protein transmembrane domain 105 349 IPR027469 -
Lcy11g0152 445 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 75 417 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0152 Lcy-Chr11:1662602 Lcy12g1497 Lcy-Chr12:34398354 1.58E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0152 K14689 - csv:116403740 547.74