Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0152 | ATGCACTATCGACCAAAAGGTCAGAGGGCCAATCCCGTGACTAAGATAGTCGTGCCAGAGGTCACACAGCAGCTTCCTGTGGAGGCTCTAGTGGATCATCAAATTAGATTGGTTGAGCAAATGGAGGAGGAAATGCCCATTTTGAGAACTGAGCATTGGCATGAAGTAGTTAAGACGCCAATCTCTGCTAAGAAGAGGAATATTTCTATTCCCAATTCCCCTGATGTAAAATGTTGCAGCTCTAGCTGTGCGTTTTCCAGATTGGAACACAGTAATTTGGAGTCGTTAAATCGTTCCAAGTCGACTATGAAGCTTGGTGGATTGATATTTTTCTATGCCATAGCTATAGTAGTTGAGATTATTGGTGGTTTGAGAGCCAACAGTCTGGCTGTAATGACAGATGCAGCTCACTTGCTCAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGGGTTTCGGGCTGGGACGCAACACCGCAACATTCCTTCGGGTATAATCGTCTTGAAGTTCTAGGTGCCCTTGTGTCTGTGCAGCTTATATGGCTGATTTCTGGGGTGTTAATCTACGAGGCAGTCGACCGAATTCTTGGCCAAAAGACAAAGGTTAACGGATTCATTATGTTCGCCATTGCAGCTTTCGGGTTCATCCTTAACTTGTTTATGGTCATGTGGCTAGGTCATAGCCACTCTCATTCTCATGGTCATTCTCATTCTCATTCTTGTCATCATAGCCATCACTCTCATCAGAATCACTTGGATCATGACACTGACCATGAGAAGGAGGAGATTTACACAATGACAAAACAAGAGGGTGTTCCTTTGGGGCCGAAGGACAATGGTTCAATGTTGAACATAAATCTCCAAGGTGCTTACCTTCATGTCATCACTGATATGATCCAATCTATTGGAGTGATGATTGCTGGAGCCGTTCTATGGGTTAAACCCGAGTGGACCGTCGTCGATTTGATCTGCACTCTTGTGTTTTCTGTTCTTGCTATGGCTACCACTTTCTCCATGCTTAGACATACTGCTGGTATATTGATGGAAGGTACACCCAGGGAGGTCAATATTGAGAGCCTAGAAAATGACCTCAAGGGCATAAAAGGAGTCCTTGCTTTGCACGACTTGCATATTTGGTCGATAACGGTCGGAAAAGTCGTGTTGTCTTGTCACGTTGTTGCCGAACACGGAGTTCCTGCTAGGGAGATCATTTCTAAGATTAAGAACCTCTCTCTGAAGAACACCAGTGGTGTTCTTCTATGTAATGAACTTTCTGTTCTGATATCCCCATATTTTCACTATGGGCTTGTAATGTTATCTGTGTGTGCATAA | 1338 | 44.1 | MHYRPKGQRANPVTKIVVPEVTQQLPVEALVDHQIRLVEQMEEEMPILRTEHWHEVVKTPISAKKRNISIPNSPDVKCCSSSCAFSRLEHSNLESLNRSKSTMKLGGLIFFYAIAIVVEIIGGLRANSLAVMTDAAHLLSDVAGFSVSLFAVWVSGWDATPQHSFGYNRLEVLGALVSVQLIWLISGVLIYEAVDRILGQKTKVNGFIMFAIAAFGFILNLFMVMWLGHSHSHSHGHSHSHSCHHSHHSHQNHLDHDTDHEKEEIYTMTKQEGVPLGPKDNGSMLNINLQGAYLHVITDMIQSIGVMIAGAVLWVKPEWTVVDLICTLVFSVLAMATTFSMLRHTAGILMEGTPREVNIESLENDLKGIKGVLALHDLHIWSITVGKVVLSCHVVAEHGVPAREIISKIKNLSLKNTSGVLLCNELSVLISPYFHYGLVMLSVCA | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1662602 | 1666989 | - | Maker00005773 | Lcy11g0152 | 646053 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0152 | 445 | Pfam | Cation efflux family | 109 | 350 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy11g0152 | 445 | NCBIfam | cation diffusion facilitator family transporter | 109 | 419 | IPR002524 | GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lcy11g0152 | 445 | MobiDBLite | consensus disorder prediction | 237 | 258 | - | - | |
Lcy11g0152 | 445 | SUPERFAMILY | Cation efflux protein transmembrane domain-like | 102 | 351 | IPR027469 | - | |
Lcy11g0152 | 445 | Gene3D | Cation efflux protein transmembrane domain | 105 | 349 | IPR027469 | - | |
Lcy11g0152 | 445 | PANTHER | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER | 75 | 417 | IPR050681 | GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0152 | Lcy-Chr11:1662602 | Lcy12g1497 | Lcy-Chr12:34398354 | 1.58E-85 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0152 | K14689 | - | csv:116403740 | 547.74 |