Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0153 ATGGCGGAGATTTGCTGTAAAGTTATGAGTGAGAGTGAGGCCTCGTCGTCCTGCGAGCCCAGCTCCAGAGTTGCCAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTCGTCGCCGGTGTTGCTCCGTCCGAGACGGATACCGTTGCCAAGCGGCAGAAGCTGGAGGATCGAGCCGCGTCGGTTTCCAGAGATTGCGATAACGCTGTCGAGAATTGTGATTCCAGCGAGGAAGAGACCGTCGGGAGATTTGTGGTTCCGACGAAGAGACAGACCTCGGTTGTACCGACGGAATCTCCTTGCGTTCCTCTCAACGGAGAGATTCCGAAGTTTGGATTCTCTTCTGTTTGCGGAAGGCGGAGAGATATGGAGGATGCGGTGGCTGTTCATCCATCGCTCTGTTTTACAGAAAAGGAAGCCACCGATAAGTTGCACTTCTTCGGTGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGAGCGACTGCACGAACTTGTGAAAGAAGAGTTGGGTACGGAGGAGAACGAAGAGTCTTCGGCCGCCGCCGCCGGATGGGACGGCGCTATGAAGAGAATCTTCATGCGTATGGACAAGGAAGTTGTGGCGCGAAACAATGAGGAAGTTGTGGTTGCGAATTGCAGATGCGAACTGCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCTCGAGCCGTTCTCTGCCGCAACGGCAAGGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGTACCGACGAACTGAACCGGATCGAGGAAGCCGGCGGTAGAGTGATCTACTGGGACGGACCGAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAACTATCTGAAACCGTACGTGATTTCGGAGCCGGAGGTGACGGTGACAGATCGGACGGCGGAGGACGAGTGCCTGATTCTGGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCATGTGGAGTGGCGAGCATGTGCCTCCGAGGGAAGGCGGAGGCGCAGTCGCCGGGGTCGCCGTCGACGGCGGGGAGCTCGGATAAGGCCTGCAACGATGCGTCGATGCTACTGACGAAGCTAGCGCTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTAG 1227 57.62 MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETDTVAKRQKLEDRAASVSRDCDNAVENCDSSEEETVGRFVVPTKRQTSVVPTESPCVPLNGEIPKFGFSSVCGRRRDMEDAVAVHPSLCFTEKEATDKLHFFGVYDGHGCSHVAMRCKERLHELVKEELGTEENEESSAAAAGWDGAMKRIFMRMDKEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRTDELNRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTDRTAEDECLILASDGLWDVVPNETACGVASMCLRGKAEAQSPGSPSTAGSSDKACNDASMLLTKLALARHSTDNVSVVVVDLKRDT 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1691780 1693649 + Maker00005793 Lcy11g0153 646054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0153 408 CDD PP2Cc 110 404 IPR001932 -
Lcy11g0153 408 ProSiteProfiles PPM-type phosphatase domain profile. 110 404 IPR001932 -
Lcy11g0153 408 Coils Coil 52 72 - -
Lcy11g0153 408 Pfam Protein phosphatase 2C 111 397 IPR001932 -
Lcy11g0153 408 SUPERFAMILY PP2C-like 106 405 IPR036457 -
Lcy11g0153 408 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169(InterPro)
Lcy11g0153 408 SMART PP2C_4 98 402 IPR001932 -
Lcy11g0153 408 PANTHER PROTEIN PHOSPHATASE 67 403 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy11g0153 408 Gene3D - 101 408 IPR036457 -
Lcy11g0153 408 FunFam Protein phosphatase 2C 37 105 408 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0153 Lcy-Chr11:1691780 Lcy6g0081 Lcy-Chr6:773112 5.32E-84 dispersed
Lcy6g0217 Lcy-Chr6:1982653 Lcy11g0153 Lcy-Chr11:1691780 8.05E-23 transposed
Lcy7g1000 Lcy-Chr7:10507846 Lcy11g0153 Lcy-Chr11:1691780 7.94E-36 transposed
Lcy10g2240 Lcy-Chr10:46200009 Lcy11g0153 Lcy-Chr11:1691780 5.26E-99 wgd
Lcy11g0153 Lcy-Chr11:1691780 Lcy13g0137 Lcy-Chr13:1323540 1.78E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0153 K14497 - csv:101206871 635.565