Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0153 | ATGGCGGAGATTTGCTGTAAAGTTATGAGTGAGAGTGAGGCCTCGTCGTCCTGCGAGCCCAGCTCCAGAGTTGCCAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTCGTCGCCGGTGTTGCTCCGTCCGAGACGGATACCGTTGCCAAGCGGCAGAAGCTGGAGGATCGAGCCGCGTCGGTTTCCAGAGATTGCGATAACGCTGTCGAGAATTGTGATTCCAGCGAGGAAGAGACCGTCGGGAGATTTGTGGTTCCGACGAAGAGACAGACCTCGGTTGTACCGACGGAATCTCCTTGCGTTCCTCTCAACGGAGAGATTCCGAAGTTTGGATTCTCTTCTGTTTGCGGAAGGCGGAGAGATATGGAGGATGCGGTGGCTGTTCATCCATCGCTCTGTTTTACAGAAAAGGAAGCCACCGATAAGTTGCACTTCTTCGGTGTTTACGACGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGAGCGACTGCACGAACTTGTGAAAGAAGAGTTGGGTACGGAGGAGAACGAAGAGTCTTCGGCCGCCGCCGCCGGATGGGACGGCGCTATGAAGAGAATCTTCATGCGTATGGACAAGGAAGTTGTGGCGCGAAACAATGAGGAAGTTGTGGTTGCGAATTGCAGATGCGAACTGCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCTCGAGCCGTTCTCTGCCGCAACGGCAAGGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGTACCGACGAACTGAACCGGATCGAGGAAGCCGGCGGTAGAGTGATCTACTGGGACGGACCGAGAGTCCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAACTATCTGAAACCGTACGTGATTTCGGAGCCGGAGGTGACGGTGACAGATCGGACGGCGGAGGACGAGTGCCTGATTCTGGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCATGTGGAGTGGCGAGCATGTGCCTCCGAGGGAAGGCGGAGGCGCAGTCGCCGGGGTCGCCGTCGACGGCGGGGAGCTCGGATAAGGCCTGCAACGATGCGTCGATGCTACTGACGAAGCTAGCGCTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTAG | 1227 | 57.62 | MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETDTVAKRQKLEDRAASVSRDCDNAVENCDSSEEETVGRFVVPTKRQTSVVPTESPCVPLNGEIPKFGFSSVCGRRRDMEDAVAVHPSLCFTEKEATDKLHFFGVYDGHGCSHVAMRCKERLHELVKEELGTEENEESSAAAAGWDGAMKRIFMRMDKEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRTDELNRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTDRTAEDECLILASDGLWDVVPNETACGVASMCLRGKAEAQSPGSPSTAGSSDKACNDASMLLTKLALARHSTDNVSVVVVDLKRDT | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1691780 | 1693649 | + | Maker00005793 | Lcy11g0153 | 646054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0153 | 408 | CDD | PP2Cc | 110 | 404 | IPR001932 | - | |
Lcy11g0153 | 408 | ProSiteProfiles | PPM-type phosphatase domain profile. | 110 | 404 | IPR001932 | - | |
Lcy11g0153 | 408 | Coils | Coil | 52 | 72 | - | - | |
Lcy11g0153 | 408 | Pfam | Protein phosphatase 2C | 111 | 397 | IPR001932 | - | |
Lcy11g0153 | 408 | SUPERFAMILY | PP2C-like | 106 | 405 | IPR036457 | - | |
Lcy11g0153 | 408 | ProSitePatterns | PPM-type phosphatase domain signature. | 146 | 154 | IPR000222 | GO:0043169(InterPro) | |
Lcy11g0153 | 408 | SMART | PP2C_4 | 98 | 402 | IPR001932 | - | |
Lcy11g0153 | 408 | PANTHER | PROTEIN PHOSPHATASE | 67 | 403 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Lcy11g0153 | 408 | Gene3D | - | 101 | 408 | IPR036457 | - | |
Lcy11g0153 | 408 | FunFam | Protein phosphatase 2C 37 | 105 | 408 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0153 | Lcy-Chr11:1691780 | Lcy6g0081 | Lcy-Chr6:773112 | 5.32E-84 | dispersed | |
Lcy6g0217 | Lcy-Chr6:1982653 | Lcy11g0153 | Lcy-Chr11:1691780 | 8.05E-23 | transposed | |
Lcy7g1000 | Lcy-Chr7:10507846 | Lcy11g0153 | Lcy-Chr11:1691780 | 7.94E-36 | transposed | |
Lcy10g2240 | Lcy-Chr10:46200009 | Lcy11g0153 | Lcy-Chr11:1691780 | 5.26E-99 | wgd | |
Lcy11g0153 | Lcy-Chr11:1691780 | Lcy13g0137 | Lcy-Chr13:1323540 | 1.78E-75 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0153 | K14497 | - | csv:101206871 | 635.565 |