Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0169 ATGGATAATCTCCTCGACGATTTTTCCAATTCATGGAGTAATTTTCACTTCCACCCCCATCTCTCCAATGGGTTGTTCAAAGTCAACCGCGAAATCGTCGATCCCCTTCAGATTCCGGCCAAGCCACAGCAAGATCAGCACCAACTCAGTAACAATTCGTCCTCATCGACGTCGACGTCGCCGTCTCTGTCGCCGTCGAGCTCCGAGGGCGACTCGCAGGACAGCCATGACACCTCGAATACGATGCTCAAGTACATAAGCGAGATGCTGATGGACGAAGAGGAGGATCTCAAAACGAAGCCCTGTATGCTTCTTGACTGCTTGGCTCTTCAGGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTAAGAAGTATCCCCCTTCTCCAATCGGAAATGGCGATTCTGCTCAGAGTTTCTGCTGTGATTTGGCTTCTGGTAAGGCTGAAGATGAATCTGAATCTTTTAGTGGAAATTCCTCTGTTTATGCCCCTTTTGAAAACCCTTTTTTGGGTCAAGATTCATTTCTTGGGATGCAATATATTGGCCATTTTAGGAAAGGAGCTGAGGAGGCTAGTAAGTTTCTTCCTGCTAATGGAAGATTTGGGACCATTGACTTGGATAATGATTCGTTTACATCTGCTCCTTCTAGGGCTGAGGATTTTTCTTGGGTTGTTGCTGAGAGAGATGGCAGATCCAGCCTTGAAAATGGGTTGTTGAGAGAGAAGAAGAATCATCAGAGGGAGGATAGTGATGAGGAGTTGAGAAGTAGTAAGCAGTCTGCTACTTTTGCTGATGATAATTCACTGTCTGAGTTGTTTGATGAACTTTTGCTTTGTCGGGGCGAGAGTCGGCAGTCGCCGTCGTGGGGTTCGGACGAATCGTTGGACAACGAATCGAATAAGAAGTCGAGGAGGACGAAGGGGAAGAAGACTCGTTCTAGGAAGCAAGAGAATAGTGTGGAAGTTGTGGATTTATGGACATTGTTGATTCAATGTGCTCAGGCTGTTTCAAATTATGATCAAAGGACTGCAACTGAGCTGCTTAATCAGATCAGGCAGCATTCTAATCCATCTGGGGATGGAAATCAGAGATTAGCTTATTACTTTGCAAAGGGCCTCGAGACTCGGCTTGCGGCCGGGACACCTCTGTATATGCCCTTTGCAAGCAATGAAACCTCTGCTGCTGATATCTTGAAAGCTTATCAGATGTTCATCAAGGCGTGCCCGTTTCGGCGGATGTCGTATTTCTATGCCAACAGAGTGATTCTGAAGCGAGCTGAGAAAGTAACAAGGCTGCATATTGTTGATTTTGGTCTTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAGCGGCTCTCGCGCAGACCTGGTGGACCTCCAAAGCTTCGGATCACCGGGATCGAGCTTCCCCAGCCAGGATTCCGCCCCGCTGAACGGGTTGAGCAGACTGGACGTCGCCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAAACTGTTAGATATGAAGATCTCAATGTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACCGTCGTCGCAAACAGCCCGAGAGACAGGGTTCTGAAGTTGATCAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAACGGCTCATTCAACACTCCATTCTTCAACACAAGGTTTAAGGAGGCACTCTTTTACTACTCGTCATTGTTCGACATTTACGAGGCGACAATGCCTCGAGATAATCCACAGAGATATCTCTGCGAGAACGTAATCCTGGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTCGAGAGAGTCGAAAGGCCAGAGACGTACAAGCAATGGCAAGTAAGGAACACGAGGGCCGGGTTCAAGCAAGTACCATTAGACCAGGAACTGCTGAAGAGTGTGGAGAAGATAGTGACCACAGAATACCATCAGGACTTCGCGGTCGATCAGGACGGGGCGTGGATGCTGCAAGGCTGGAAGGGACGGATCATCGACGGGTTGTCGTGTTGGGTAGTTGCCTAA 2094 47.61 MDNLLDDFSNSWSNFHFHPHLSNGLFKVNREIVDPLQIPAKPQQDQHQLSNNSSSSTSTSPSLSPSSSEGDSQDSHDTSNTMLKYISEMLMDEEEDLKTKPCMLLDCLALQAAEKSFYDVLGKKYPPSPIGNGDSAQSFCCDLASGKAEDESESFSGNSSVYAPFENPFLGQDSFLGMQYIGHFRKGAEEASKFLPANGRFGTIDLDNDSFTSAPSRAEDFSWVVAERDGRSSLENGLLREKKNHQREDSDEELRSSKQSATFADDNSLSELFDELLLCRGESRQSPSWGSDESLDNESNKKSRRTKGKKTRSRKQENSVEVVDLWTLLIQCAQAVSNYDQRTATELLNQIRQHSNPSGDGNQRLAYYFAKGLETRLAAGTPLYMPFASNETSAADILKAYQMFIKACPFRRMSYFYANRVILKRAEKVTRLHIVDFGLLYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDIYEATMPRDNPQRYLCENVILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKSVEKIVTTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCWVVA 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1863010 1865103 - Maker00005764 Lcy11g0169 646070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0169 697 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 302 688 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy11g0169 697 MobiDBLite consensus disorder prediction 235 259 - -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 41 78 - -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 40 78 - -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 235 262 - -
Lcy11g0169 697 ProSiteProfiles GRAS family profile. 316 695 IPR005202 -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 283 315 - -
Lcy11g0169 697 Pfam GRAS domain family 327 694 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0169 Lcy-Chr11:1863010 Lcy8g1366 Lcy-Chr8:40399681 3.38E-65 dispersed
Lcy4g0590 Lcy-Chr4:7117271 Lcy11g0169 Lcy-Chr11:1863010 1.11E-38 transposed
Lcy11g0169 Lcy-Chr11:1863010 Lcy5g0199 Lcy-Chr5:1949717 1.61E-186 wgd
Lcy11g0169 Lcy-Chr11:1863010 Lcy8g1797 Lcy-Chr8:44374285 1.83E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19076 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0169 K27753 - csv:101217374 1157.51