Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0169 ATGGATAATCTCCTCGACGATTTTTCCAATTCATGGAGTAATTTTCACTTCCACCCCCATCTCTCCAATGGGTTGTTCAAAGTCAACCGCGAAATCGTCGATCCCCTTCAGATTCCGGCCAAGCCACAGCAAGATCAGCACCAACTCAGTAACAATTCGTCCTCATCGACGTCGACGTCGCCGTCTCTGTCGCCGTCGAGCTCCGAGGGCGACTCGCAGGACAGCCATGACACCTCGAATACGATGCTCAAGTACATAAGCGAGATGCTGATGGACGAAGAGGAGGATCTCAAAACGAAGCCCTGTATGCTTCTTGACTGCTTGGCTCTTCAGGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTAAGAAGTATCCCCCTTCTCCAATCGGAAATGGCGATTCTGCTCAGAGTTTCTGCTGTGATTTGGCTTCTGGTAAGGCTGAAGATGAATCTGAATCTTTTAGTGGAAATTCCTCTGTTTATGCCCCTTTTGAAAACCCTTTTTTGGGTCAAGATTCATTTCTTGGGATGCAATATATTGGCCATTTTAGGAAAGGAGCTGAGGAGGCTAGTAAGTTTCTTCCTGCTAATGGAAGATTTGGGACCATTGACTTGGATAATGATTCGTTTACATCTGCTCCTTCTAGGGCTGAGGATTTTTCTTGGGTTGTTGCTGAGAGAGATGGCAGATCCAGCCTTGAAAATGGGTTGTTGAGAGAGAAGAAGAATCATCAGAGGGAGGATAGTGATGAGGAGTTGAGAAGTAGTAAGCAGTCTGCTACTTTTGCTGATGATAATTCACTGTCTGAGTTGTTTGATGAACTTTTGCTTTGTCGGGGCGAGAGTCGGCAGTCGCCGTCGTGGGGTTCGGACGAATCGTTGGACAACGAATCGAATAAGAAGTCGAGGAGGACGAAGGGGAAGAAGACTCGTTCTAGGAAGCAAGAGAATAGTGTGGAAGTTGTGGATTTATGGACATTGTTGATTCAATGTGCTCAGGCTGTTTCAAATTATGATCAAAGGACTGCAACTGAGCTGCTTAATCAGATCAGGCAGCATTCTAATCCATCTGGGGATGGAAATCAGAGATTAGCTTATTACTTTGCAAAGGGCCTCGAGACTCGGCTTGCGGCCGGGACACCTCTGTATATGCCCTTTGCAAGCAATGAAACCTCTGCTGCTGATATCTTGAAAGCTTATCAGATGTTCATCAAGGCGTGCCCGTTTCGGCGGATGTCGTATTTCTATGCCAACAGAGTGATTCTGAAGCGAGCTGAGAAAGTAACAAGGCTGCATATTGTTGATTTTGGTCTTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAGCGGCTCTCGCGCAGACCTGGTGGACCTCCAAAGCTTCGGATCACCGGGATCGAGCTTCCCCAGCCAGGATTCCGCCCCGCTGAACGGGTTGAGCAGACTGGACGTCGCCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAAACTGTTAGATATGAAGATCTCAATGTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACCGTCGTCGCAAACAGCCCGAGAGACAGGGTTCTGAAGTTGATCAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAACGGCTCATTCAACACTCCATTCTTCAACACAAGGTTTAAGGAGGCACTCTTTTACTACTCGTCATTGTTCGACATTTACGAGGCGACAATGCCTCGAGATAATCCACAGAGATATCTCTGCGAGAACGTAATCCTGGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTCGAGAGAGTCGAAAGGCCAGAGACGTACAAGCAATGGCAAGTAAGGAACACGAGGGCCGGGTTCAAGCAAGTACCATTAGACCAGGAACTGCTGAAGAGTGTGGAGAAGATAGTGACCACAGAATACCATCAGGACTTCGCGGTCGATCAGGACGGGGCGTGGATGCTGCAAGGCTGGAAGGGACGGATCATCGACGGGTTGTCGTGTTGGGTAGTTGCCTAA 2094 47.61 MDNLLDDFSNSWSNFHFHPHLSNGLFKVNREIVDPLQIPAKPQQDQHQLSNNSSSSTSTSPSLSPSSSEGDSQDSHDTSNTMLKYISEMLMDEEEDLKTKPCMLLDCLALQAAEKSFYDVLGKKYPPSPIGNGDSAQSFCCDLASGKAEDESESFSGNSSVYAPFENPFLGQDSFLGMQYIGHFRKGAEEASKFLPANGRFGTIDLDNDSFTSAPSRAEDFSWVVAERDGRSSLENGLLREKKNHQREDSDEELRSSKQSATFADDNSLSELFDELLLCRGESRQSPSWGSDESLDNESNKKSRRTKGKKTRSRKQENSVEVVDLWTLLIQCAQAVSNYDQRTATELLNQIRQHSNPSGDGNQRLAYYFAKGLETRLAAGTPLYMPFASNETSAADILKAYQMFIKACPFRRMSYFYANRVILKRAEKVTRLHIVDFGLLYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDIYEATMPRDNPQRYLCENVILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQELLKSVEKIVTTEYHQDFAVDQDGAWMLQGWKGRIIDGLSCWVVA 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1863010 1865103 - Maker00005764 Lcy11g0169 646070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0169 697 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 302 688 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy11g0169 697 MobiDBLite consensus disorder prediction 235 259 - -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 41 78 - -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 40 78 - -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 235 262 - -
Lcy11g0169 697 ProSiteProfiles GRAS family profile. 316 695 IPR005202 -
Lcy11g0169 697 MobiDBLite consensus disorder prediction 283 315 - -
Lcy11g0169 697 Pfam GRAS domain family 327 694 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0169 K27753 - - csv:101217374 1157.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0169 Lcy-Chr11:1863010 Lcy8g1366 Lcy-Chr8:40399681 3.38E-65 dispersed
Lcy4g0590 Lcy-Chr4:7117271 Lcy11g0169 Lcy-Chr11:1863010 1.11E-38 transposed
Lcy11g0169 Lcy-Chr11:1863010 Lcy5g0199 Lcy-Chr5:1949717 1.61E-186 wgd
Lcy11g0169 Lcy-Chr11:1863010 Lcy8g1797 Lcy-Chr8:44374285 1.83E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g468 . . . Bda09g01510 . . . . Cmo13g00114 . . Cma13g00118 . Car13g00086 Sed01g1103 . . Bhi08g00587 Tan01g2424 Cmetu12g1542 . Hepe10g1249 . Lcy11g0169 . . . . . . . Cone1ag0631 Cone5ag1135 Cone4ag1049 . Lsi02g01346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g00163
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g0199 . 77 757 GRAS Transcription Factor Family AT2G37650 54.6 4.4e-198 688.7
Lcy11g0169 . 245 697 GRAS Transcription Factor Family AT3G46600 50.5 1.1e-127 454.5
Lcy1g0926 . 49 470 GRAS Transcription Factor Family AT3G49950 60.7 1.1e-137 487.3
Lcy6g2096 . 417 781 GRAS Transcription Factor Family AT3G60630 51.4 6.4e-92 335.9
Lcy6g0948 . 80 531 GRAS Transcription Factor Family AT4G36710 54.4 9.6e-128 454.5
Lcy6g0725 . 42 449 GRAS Transcription Factor Family AT5G41920 67.8 3.9e-151 531.9
Lcy1g1654 . 458 834 GRAS Transcription Factor Family AT5G41920 56.6 4.6e-115 412.1
Lcy1g0718 . 61 601 GRAS Transcription Factor Family AT5G66770 57.7 1.3e-166 583.9
Lcy6g0963 . 8 537 GRAS Transcription Factor Family AT5G66770 56.6 1.8e-152 537.0
Lcy8g1366 . 44 535 GRAS Transcription Factor Family AT1G50600 60.0 1.6e-165 580.1
Lcy6g1707 . 106 541 GRAS Transcription Factor Family AT1G50600 64.4 5.5e-161 565.1
Lcy9g1234 . 223 593 GRAS Transcription Factor Family AT1G50600 62.5 7.9e-136 481.5
Lcy9g0957 . 195 577 GRAS Transcription Factor Family AT1G50600 50.7 7.0e-108 388.7
Lcy10g1389 . 44 579 GRAS Transcription Factor Family AT1G14920 68.8 1.1e-209 726.9
Lcy10g1141 . 1305 1851 GRAS Transcription Factor Family AT1G14920 61.6 1.8e-180 629.8
Lcy12g0184 . 1 544 GRAS Transcription Factor Family AT1G14920 54.1 3.4e-158 555.8
Lcy10g1389 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.2e-175 612.8
Lcy10g1141 . 1305 1852 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-175 612.1
Lcy12g0184 . 1 541 GRAS Transcription Factor Family AT1G66350 58.3 2.6e-168 589.3
Lcy8g1797 . 260 789 GRAS Transcription Factor Family AT1G07520 50.5 7.5e-142 501.5
Lcy8g1366 . 8 535 GRAS Transcription Factor Family AT5G48150 65.5 1.0e-193 673.7
Lcy6g1707 . 111 541 GRAS Transcription Factor Family AT5G48150 69.4 1.8e-174 609.8
Lcy9g1234 . 113 593 GRAS Transcription Factor Family AT5G48150 51.7 3.0e-137 486.1
Lcy10g1389 . 46 578 GRAS Transcription Factor Family AT2G01570 69.7 3.3e-215 745.3
Lcy10g1141 . 1307 1849 GRAS Transcription Factor Family AT2G01570 60.9 4.1e-181 632.1
Lcy12g0184 . 27 542 GRAS Transcription Factor Family AT2G01570 57.8 2.9e-163 572.8
Lcy10g1389 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.2e-175 612.8
Lcy10g1141 . 1305 1852 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-175 612.1
Lcy12g0184 . 1 541 GRAS Transcription Factor Family AT1G66350 58.3 2.6e-168 589.3
Lcy10g1141 . 1307 1848 GRAS Transcription Factor Family AT3G03450 60.6 1.3e-173 607.1
Lcy10g1389 . 46 576 GRAS Transcription Factor Family AT3G03450 60.6 4.6e-171 598.6
Lcy12g0184 . 27 542 GRAS Transcription Factor Family AT3G03450 58.6 3.4e-158 555.8
Lcy10g1141 . 1306 1851 GRAS Transcription Factor Family AT5G17490 56.8 2.1e-157 553.1
Lcy10g1389 . 42 579 GRAS Transcription Factor Family AT5G17490 56.9 4.7e-157 552.0
Lcy12g0184 . 24 543 GRAS Transcription Factor Family AT5G17490 55.1 9.3e-145 511.1
Lcy9g0957 . 1 577 GRAS Transcription Factor Family AT1G21450 57.6 8.8e-176 614.4
Lcy6g1707 . 165 541 GRAS Transcription Factor Family AT1G21450 53.4 2.7e-116 416.8
Lcy5g0199 . 307 756 GRAS Transcription Factor Family AT5G59450 50.1 1.2e-122 438.0
Lcy8g1366 . 15 534 GRAS Transcription Factor Family AT4G17230 51.3 1.1e-145 514.2
Lcy6g1707 . 84 541 GRAS Transcription Factor Family AT4G17230 53.7 2.2e-133 473.4
Lcy9g1234 . 220 593 GRAS Transcription Factor Family AT4G17230 53.2 3.3e-113 406.4
Lcy8g1366 . 123 535 GRAS Transcription Factor Family AT2G04890 67.1 1.3e-162 570.1
Lcy6g1707 . 163 541 GRAS Transcription Factor Family AT2G04890 65.2 5.1e-146 515.0
Lcy9g1234 . 175 593 GRAS Transcription Factor Family AT2G04890 55.7 1.1e-129 460.7
Lcy2g1246 . 1 472 GRAS Transcription Factor Family AT1G50420 65.6 3.9e-174 608.6
Lcy7g0679 . 180 641 GRAS Transcription Factor Family AT1G50420 61.1 5.7e-157 551.6
Lcy6g2096 . 417 780 GRAS Transcription Factor Family AT4G00150 55.7 1.3e-104 377.9
Lcy1g0718 . 57 601 GRAS Transcription Factor Family AT3G50650 53.1 3.0e-146 516.2
Lcy6g0963 . 11 537 GRAS Transcription Factor Family AT3G50650 51.8 1.2e-131 467.6
Lcy1g1654 . 180 832 GRAS Transcription Factor Family AT3G54220 60.4 2.2e-204 709.5
Lcy6g0725 . 82 447 GRAS Transcription Factor Family AT3G54220 64.5 5.8e-136 482.3
Lcy1g0915 . 101 492 GRAS Transcription Factor Family AT4G37650 68.3 2.2e-157 553.1
Lcy8g0721 . 115 503 GRAS Transcription Factor Family AT4G37650 61.7 3.8e-138 489.2
Lcy3g1226 . 62 453 GRAS Transcription Factor Family AT4G37650 51.8 8.3e-117 418.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004971 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19076 None None None None Lcy TF