Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0175 ATGGCTAAATCCGCCATTCTCCTCTGCATTGCATCTCTCATCTCCGCATTGTGGCCGGCCGCCGCCAGGATCCCCGGCGTCTACTCCGGCGGCTCCTGGCAGAGCGCCCACGCCACCTTCTACGGCGGCTCCGACGCCTCTGGCACGATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAGGGCTACGGGGTGAACACGGCGGCATTGAGCACGGCGCTGTTCAACAATGGGCTGAGCTGCGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGCAGCCCGTCGATTGTGATTACGGCGACGAACTTCTGCCCTCCGAACTTCGCTCTGCCCAGCGACAATGGCGGATGGTGCAACCCTCCTCGCCCGCATTTCGATTTGGCGATGCCTATGTTTCTTAAGATCGCTGAGTACCGTGCCGGTATCGTCCCCGTCGCCTATCGCCGGTACTTCAACTTGGTTCTAATCACGAACGTCGCAGGCGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGCACGCGCACCGGGTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGCTGGTGGGCCAGGCCCTGTCCTTTAGAGTGACAGGCAGTGACAGAAGGACATCCACCTCCTTCAACGTGGCGCCCGCTGATTGGCAGTTCGGCCAGACCTTCATCGGCAAGAATTTTAGGGTTTGA 729 59.67 MAKSAILLCIASLISALWPAAARIPGVYSGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPADWQFGQTFIGKNFRV 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1996279 1998041 + Maker00005939 Lcy11g0175 646076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0175 242 Gene3D - 155 240 IPR036749 -
Lcy11g0175 242 SUPERFAMILY PHL pollen allergen 156 236 IPR036749 -
Lcy11g0175 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 157 IPR007112 -
Lcy11g0175 242 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Lcy11g0175 242 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Lcy11g0175 242 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Lcy11g0175 242 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Lcy11g0175 242 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Lcy11g0175 242 Pfam Expansin C-terminal domain 155 226 IPR007117 -
Lcy11g0175 242 FunFam Expansin 151 240 - -
Lcy11g0175 242 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Lcy11g0175 242 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lcy11g0175 242 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Lcy11g0175 242 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Lcy11g0175 242 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576(InterPro)
Lcy11g0175 242 CDD DPBB_EXPA_N 33 157 - -
Lcy11g0175 242 Pfam Lytic transglycolase 68 155 IPR009009 -
Lcy11g0175 242 Gene3D - 21 154 IPR036908 -
Lcy11g0175 242 FunFam Expansin 22 160 - -
Lcy11g0175 242 SUPERFAMILY Barwin-like endoglucanases 32 166 IPR036908 -
Lcy11g0175 242 SMART dpbb_1 68 155 IPR007112 -
Lcy11g0175 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Lcy11g0175 242 PANTHER EXPANSIN-A15 16 240 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0175 Lcy-Chr11:1996279 Lcy1g1434 Lcy-Chr1:13900248 3.44E-155 dispersed
Lcy11g0175 Lcy-Chr11:1996279 Lcy7g0893 Lcy-Chr7:8939840 8.94E-152 wgd
Lcy11g0175 Lcy-Chr11:1996279 Lcy8g1801 Lcy-Chr8:44424220 2.01E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0175 - - - 0.0