Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0195 | ATGGACGAAGATACCGGCGCTCTGGTTCAGAGCTTGATCGATGTTGTGAACGAGATTGCTTGGATCTCGGATTTTAGGCTTACTGTTAAGAAACAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATAGCAAAGAGCCAGTTCCTGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGAAAATTATGAGCAAATTTCACGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATCTCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGCCAGGGCCGATGCACCTGACTCTGAGCTGTTGGATGATATCCTTACCCTTTACAACACAAGCAATGATTCTTCTGTAGATCAAGACCGCTTGAGGAGACTGGCCGGAAAATTACAGTTACTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTACTGGAGGAGATCCAGGTGAGAGCATTGAGAAGATGTCAGGGCTGCTGAAGAAAATAAAAGACTTTGTGCAAACAGAGAACCTCGAAACAGACACTCCTGGTAGTGAAAAGACTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGAGAAAAATAATAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTGATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCACGGGACGTGTCCAAAGACACAACAGAACCTTTCAAGCTCTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATCGAACCCCCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCACCCGCTGAACGCACGAAGATTGATATTCTGCTTTGCAAACTTGCATCGGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAATGCAGATAATCGTGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTTGTGCTCAAGAAAGGGAGCATGGAAGCGCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAAAATAAAGTTAGAATTGGCGCCTCTGGAGCTATCCCACCGCTCGTTACGCTGCTTAGTGAAGGCACTCAAAGGGGAAAGAAGGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTCGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGGACCGGAATGGTGGACGAAGCCTTAGCCATCTTAGCAATACTCGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCAGTGCCGGTTTTGGTAGACGTTATTGGGACAGGATCCCCAAGGAACAGAGAAAATGCAGCTGCAGTTCTCGTGCATCTCTGCTCCGGAGACGAACAATACCTAGTAGAGGCCAGGGATCTCGGAGTGATTAGTCCATTGATAGATTTGGCACGAAATGGCACAGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTAGAGCGAATGAACCGACTCTTCGAGCATGCAGTGCATCCAGAGGAGATTCGAGTGCTTCGCGTGCAAGCTCCAGAGTCTCAACCTCAAAACCAACCATCGCAATCGACCTCAACGACAGAAGTCGTTGGTAGCTGA | 2013 | 47.99 | MDEDTGALVQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREKIMSKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKARADAPDSELLDDILTLYNTSNDSSVDQDRLRRLAGKLQLLGISDLTQESIALHEMVTATGGDPGESIEKMSGLLKKIKDFVQTENLETDTPGSEKTPPASCSGQVSNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSSTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQYLVEARDLGVISPLIDLARNGTDRGKRKAAQLLERMNRLFEHAVHPEEIRVLRVQAPESQPQNQPSQSTSTTEVVGS | 670 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2283176 | 2287971 | + | Maker00005989 | Lcy11g0195 | 646096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0195 | 670 | MobiDBLite | consensus disorder prediction | 228 | 254 | - | - | |
Lcy11g0195 | 670 | SUPERFAMILY | ARM repeat | 356 | 629 | IPR016024 | - | |
Lcy11g0195 | 670 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | SMART | arm_5 | 508 | 548 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | SMART | arm_5 | 385 | 425 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | SMART | arm_5 | 426 | 466 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | SMART | arm_5 | 549 | 589 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | SMART | arm_5 | 467 | 507 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | SMART | arm_5 | 591 | 631 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | PANTHER | U BOX DOMAIN-CONTAINING | 29 | 630 | - | - | |
Lcy11g0195 | 670 | Gene3D | - | 7 | 117 | IPR036537 | GO:0007166(InterPro) | |
Lcy11g0195 | 670 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 331 | IPR013083 | - | |
Lcy11g0195 | 670 | Gene3D | - | 495 | 639 | IPR011989 | - | |
Lcy11g0195 | 670 | FunFam | RING-type E3 ubiquitin transferase | 5 | 118 | - | - | |
Lcy11g0195 | 670 | FunFam | RING-type E3 ubiquitin transferase | 258 | 331 | - | - | |
Lcy11g0195 | 670 | FunFam | RING-type E3 ubiquitin transferase | 340 | 635 | - | - | |
Lcy11g0195 | 670 | Pfam | Armadillo/beta-catenin-like repeat | 468 | 506 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | Pfam | Armadillo/beta-catenin-like repeat | 385 | 424 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | Pfam | Armadillo/beta-catenin-like repeat | 550 | 589 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | MobiDBLite | consensus disorder prediction | 648 | 670 | - | - | |
Lcy11g0195 | 670 | SUPERFAMILY | RING/U-box | 256 | 334 | - | - | |
Lcy11g0195 | 670 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy11g0195 | 670 | Gene3D | - | 337 | 492 | IPR011989 | - | |
Lcy11g0195 | 670 | CDD | MLKL_NTD | 10 | 138 | - | - | |
Lcy11g0195 | 670 | MobiDBLite | consensus disorder prediction | 228 | 253 | - | - | |
Lcy11g0195 | 670 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy11g0195 | 670 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | IPR000225 | GO:0005515(InterPro) | |
Lcy11g0195 | 670 | MobiDBLite | consensus disorder prediction | 649 | 670 | - | - | |
Lcy11g0195 | 670 | CDD | RING-Ubox_PUB | 259 | 311 | IPR045210 | - | |
Lcy11g0195 | 670 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0195 | Lcy-Chr11:2283176 | Lcy7g0632 | Lcy-Chr7:5781207 | 1.13E-141 | dispersed | |
Lcy8g1307 | Lcy-Chr8:39757307 | Lcy11g0195 | Lcy-Chr11:2283176 | 4.41E-96 | transposed | |
Lcy11g0195 | Lcy-Chr11:2283176 | Lcy7g1126 | Lcy-Chr7:12510849 | 9.74E-19 | wgd | |
Lcy11g0195 | Lcy-Chr11:2283176 | Lcy8g1815 | Lcy-Chr8:44541024 | 3.39E-199 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0195 | K27628 | - | csv:101218572 | 1118.99 |