Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0195 ATGGACGAAGATACCGGCGCTCTGGTTCAGAGCTTGATCGATGTTGTGAACGAGATTGCTTGGATCTCGGATTTTAGGCTTACTGTTAAGAAACAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATAGCAAAGAGCCAGTTCCTGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGAAAATTATGAGCAAATTTCACGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATCTCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGCCAGGGCCGATGCACCTGACTCTGAGCTGTTGGATGATATCCTTACCCTTTACAACACAAGCAATGATTCTTCTGTAGATCAAGACCGCTTGAGGAGACTGGCCGGAAAATTACAGTTACTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTACTGGAGGAGATCCAGGTGAGAGCATTGAGAAGATGTCAGGGCTGCTGAAGAAAATAAAAGACTTTGTGCAAACAGAGAACCTCGAAACAGACACTCCTGGTAGTGAAAAGACTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGAGAAAAATAATAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTGATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCACGGGACGTGTCCAAAGACACAACAGAACCTTTCAAGCTCTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATCGAACCCCCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCACCCGCTGAACGCACGAAGATTGATATTCTGCTTTGCAAACTTGCATCGGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAATGCAGATAATCGTGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTTGTGCTCAAGAAAGGGAGCATGGAAGCGCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAAAATAAAGTTAGAATTGGCGCCTCTGGAGCTATCCCACCGCTCGTTACGCTGCTTAGTGAAGGCACTCAAAGGGGAAAGAAGGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTCGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGGACCGGAATGGTGGACGAAGCCTTAGCCATCTTAGCAATACTCGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCAGTGCCGGTTTTGGTAGACGTTATTGGGACAGGATCCCCAAGGAACAGAGAAAATGCAGCTGCAGTTCTCGTGCATCTCTGCTCCGGAGACGAACAATACCTAGTAGAGGCCAGGGATCTCGGAGTGATTAGTCCATTGATAGATTTGGCACGAAATGGCACAGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTAGAGCGAATGAACCGACTCTTCGAGCATGCAGTGCATCCAGAGGAGATTCGAGTGCTTCGCGTGCAAGCTCCAGAGTCTCAACCTCAAAACCAACCATCGCAATCGACCTCAACGACAGAAGTCGTTGGTAGCTGA 2013 47.99 MDEDTGALVQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREKIMSKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKARADAPDSELLDDILTLYNTSNDSSVDQDRLRRLAGKLQLLGISDLTQESIALHEMVTATGGDPGESIEKMSGLLKKIKDFVQTENLETDTPGSEKTPPASCSGQVSNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSSTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQYLVEARDLGVISPLIDLARNGTDRGKRKAAQLLERMNRLFEHAVHPEEIRVLRVQAPESQPQNQPSQSTSTTEVVGS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2283176 2287971 + Maker00005989 Lcy11g0195 646096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0195 670 MobiDBLite consensus disorder prediction 228 254 - -
Lcy11g0195 670 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Lcy11g0195 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 PANTHER U BOX DOMAIN-CONTAINING 29 630 - -
Lcy11g0195 670 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Lcy11g0195 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Lcy11g0195 670 Gene3D - 495 639 IPR011989 -
Lcy11g0195 670 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Lcy11g0195 670 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Lcy11g0195 670 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Lcy11g0195 670 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 MobiDBLite consensus disorder prediction 648 670 - -
Lcy11g0195 670 SUPERFAMILY RING/U-box 256 334 - -
Lcy11g0195 670 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g0195 670 Gene3D - 337 492 IPR011989 -
Lcy11g0195 670 CDD MLKL_NTD 10 138 - -
Lcy11g0195 670 MobiDBLite consensus disorder prediction 228 253 - -
Lcy11g0195 670 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g0195 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 MobiDBLite consensus disorder prediction 649 670 - -
Lcy11g0195 670 CDD RING-Ubox_PUB 259 311 IPR045210 -
Lcy11g0195 670 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0195 Lcy-Chr11:2283176 Lcy7g0632 Lcy-Chr7:5781207 1.13E-141 dispersed
Lcy8g1307 Lcy-Chr8:39757307 Lcy11g0195 Lcy-Chr11:2283176 4.41E-96 transposed
Lcy11g0195 Lcy-Chr11:2283176 Lcy7g1126 Lcy-Chr7:12510849 9.74E-19 wgd
Lcy11g0195 Lcy-Chr11:2283176 Lcy8g1815 Lcy-Chr8:44541024 3.39E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0195 K27628 - csv:101218572 1118.99