Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0195 ATGGACGAAGATACCGGCGCTCTGGTTCAGAGCTTGATCGATGTTGTGAACGAGATTGCTTGGATCTCGGATTTTAGGCTTACTGTTAAGAAACAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTTGAAGAGATTAGGGATAGCAAAGAGCCAGTTCCTGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGAAAATTATGAGCAAATTTCACGAGGTAACGGCTCAGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATCTCCGATGAAGTTAAGGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGCCAGGGCCGATGCACCTGACTCTGAGCTGTTGGATGATATCCTTACCCTTTACAACACAAGCAATGATTCTTCTGTAGATCAAGACCGCTTGAGGAGACTGGCCGGAAAATTACAGTTACTTGGAATATCTGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTACTGGAGGAGATCCAGGTGAGAGCATTGAGAAGATGTCAGGGCTGCTGAAGAAAATAAAAGACTTTGTGCAAACAGAGAACCTCGAAACAGACACTCCTGGTAGTGAAAAGACTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGAGAAAAATAATAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTGATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCACGGGACGTGTCCAAAGACACAACAGAACCTTTCAAGCTCTACTCTTACCCCCAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATCGAACCCCCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCACCCGCTGAACGCACGAAGATTGATATTCTGCTTTGCAAACTTGCATCGGGAAATCCTGAAGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAGCGGAATGCAGATAATCGTGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTTGTGCTCAAGAAAGGGAGCATGGAAGCGCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTGGACGAAAATAAAGTTAGAATTGGCGCCTCTGGAGCTATCCCACCGCTCGTTACGCTGCTTAGTGAAGGCACTCAAAGGGGAAAGAAGGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTGAGAGCTGGTGTCGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGGACCGGAATGGTGGACGAAGCCTTAGCCATCTTAGCAATACTCGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCAGTGCCGGTTTTGGTAGACGTTATTGGGACAGGATCCCCAAGGAACAGAGAAAATGCAGCTGCAGTTCTCGTGCATCTCTGCTCCGGAGACGAACAATACCTAGTAGAGGCCAGGGATCTCGGAGTGATTAGTCCATTGATAGATTTGGCACGAAATGGCACAGATAGAGGCAAGCGAAAAGCTGCACAGTTGCTAGAGCGAATGAACCGACTCTTCGAGCATGCAGTGCATCCAGAGGAGATTCGAGTGCTTCGCGTGCAAGCTCCAGAGTCTCAACCTCAAAACCAACCATCGCAATCGACCTCAACGACAGAAGTCGTTGGTAGCTGA 2013 47.99 MDEDTGALVQSLIDVVNEIAWISDFRLTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVPEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVEREKIMSKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKARADAPDSELLDDILTLYNTSNDSSVDQDRLRRLAGKLQLLGISDLTQESIALHEMVTATGGDPGESIEKMSGLLKKIKDFVQTENLETDTPGSEKTPPASCSGQVSNEKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSSTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQYLVEARDLGVISPLIDLARNGTDRGKRKAAQLLERMNRLFEHAVHPEEIRVLRVQAPESQPQNQPSQSTSTTEVVGS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2283176 2287971 + Maker00005989 Lcy11g0195 646096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0195 670 MobiDBLite consensus disorder prediction 228 254 - -
Lcy11g0195 670 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Lcy11g0195 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 PANTHER U BOX DOMAIN-CONTAINING 29 630 - -
Lcy11g0195 670 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Lcy11g0195 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Lcy11g0195 670 Gene3D - 495 639 IPR011989 -
Lcy11g0195 670 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Lcy11g0195 670 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Lcy11g0195 670 FunFam RING-type E3 ubiquitin transferase 340 635 - -
Lcy11g0195 670 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 MobiDBLite consensus disorder prediction 648 670 - -
Lcy11g0195 670 SUPERFAMILY RING/U-box 256 334 - -
Lcy11g0195 670 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g0195 670 Gene3D - 337 492 IPR011989 -
Lcy11g0195 670 CDD MLKL_NTD 10 138 - -
Lcy11g0195 670 MobiDBLite consensus disorder prediction 228 253 - -
Lcy11g0195 670 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy11g0195 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Lcy11g0195 670 MobiDBLite consensus disorder prediction 649 670 - -
Lcy11g0195 670 CDD RING-Ubox_PUB 259 311 IPR045210 -
Lcy11g0195 670 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0195 K27628 - - csv:101218572 1118.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0195 Lcy-Chr11:2283176 Lcy7g0632 Lcy-Chr7:5781207 1.13E-141 dispersed
Lcy8g1307 Lcy-Chr8:39757307 Lcy11g0195 Lcy-Chr11:2283176 4.41E-96 transposed
Lcy11g0195 Lcy-Chr11:2283176 Lcy7g1126 Lcy-Chr7:12510849 9.74E-19 wgd
Lcy11g0195 Lcy-Chr11:2283176 Lcy8g1815 Lcy-Chr8:44541024 3.39E-199 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004307 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43