Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0196 ATGGATTTCTCTTCTGTTCCAGTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATAATCATCATCATCAGATAAGCAATAATGGATCTCCTCAGCACCACCACCAGCTTCTTTCCCTGCCAACTCAACAACAACTGCCATCTGCTCCGCCGTCTCATGTCGGTGGTGGCGGCGGCATCATTGGCTCGATCCGACGCGGTTCGATGGCGGACCGAGCTCGGCTCGCCAACGTACCGCTACCCGAGACGGCGCTCAAGTGCCCTCGATGTGATTCCACCAACACGAAGTTCTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGACGGTACTGGACTCGCGGTGGCGCCCTTCGGAACGTCCCGGTTGGGGGCGGTTGTCGTCGGAATAAGAAGAACAAAACTAGACGCTCGAAGTCTCCGGTGGCCGGGAACGAAACGCAGCTGAATAACAATAACAATTCAAACTCGCCCACCACTACTACAATTCCCTTGCACAGCAGCACTGAGAATATTATTGGTCATTTACAGCCTCAGCATCCTCACCTTTCGTTGATGGCTTCATTGAATAATTTTTCTCGATATGGGACGACGAATTTAGGGTTGAATTTCAACGAGATCCAGGCTCAATCTGGAGACATTGGGAACGGCGCCCTTCTGAATCATCAGTGGCGCGGTTCCCAAAACTTTCCTCTTTCAGGTGGCCTAGAAACCCCGACCGGGTTGTACCCGTTCCAAATTAGCGACGGCGGCAACAACGACGCAACGAATTCAATCCTACCACCAAATTCAAGGGCAACCCAATTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAACTTGGGTGTCAACAATTCAGAGAACAACCAATTTTGGAGCAATGGAAATGGCTGGACAGATCTTTCAGCTATCAGTTCTTCATCAAGTGACCATATTTCTTGCGACTTCAATCATTAA 1008 49.21 MDFSSVPVYLDPPPNWHQQSNHNHHHQISNNGSPQHHHQLLSLPTQQQLPSAPPSHVGGGGGIIGSIRRGSMADRARLANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPVAGNETQLNNNNNSNSPTTTTIPLHSSTENIIGHLQPQHPHLSLMASLNNFSRYGTTNLGLNFNEIQAQSGDIGNGALLNHQWRGSQNFPLSGGLETPTGLYPFQISDGGNNDATNSILPPNSRATQLPPVKIEETQVLNLLKSSNLGVNNSENNQFWSNGNGWTDLSAISSSSSDHISCDFNH 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2320838 2322893 + Maker00005889 Lcy11g0196 646097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0196 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 77 208 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0196 335 ProSiteProfiles Zinc finger Dof-type profile. 88 142 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy11g0196 335 MobiDBLite consensus disorder prediction 150 171 - -
Lcy11g0196 335 ProSitePatterns Zinc finger Dof-type signature. 90 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy11g0196 335 MobiDBLite consensus disorder prediction 134 171 - -
Lcy11g0196 335 MobiDBLite consensus disorder prediction 14 39 - -
Lcy11g0196 335 MobiDBLite consensus disorder prediction 11 39 - -
Lcy11g0196 335 Pfam Dof domain, zinc finger 87 142 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1842 Lcy-Chr10:42711740 Lcy11g0196 Lcy-Chr11:2320838 1.32E-45 dispersed
Lcy11g0196 Lcy-Chr11:2320838 Lcy7g0883 Lcy-Chr7:8810273 3.14E-56 dispersed
Lcy10g1324 Lcy-Chr10:36104615 Lcy11g0196 Lcy-Chr11:2320838 7.43E-29 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy13g0163 Lcy-Chr13:1700137 8.49E-28 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy3g0085 Lcy-Chr3:2155185 7.86E-30 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy5g0212 Lcy-Chr5:2041717 3.80E-53 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy8g1873 Lcy-Chr8:45055169 3.40E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19077 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0196 - - - 0.0