Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0196 ATGGATTTCTCTTCTGTTCCAGTCTATTTAGATCCTCCTCCCAATTGGCATCAGCAATCAAATCATAATCATCATCATCAGATAAGCAATAATGGATCTCCTCAGCACCACCACCAGCTTCTTTCCCTGCCAACTCAACAACAACTGCCATCTGCTCCGCCGTCTCATGTCGGTGGTGGCGGCGGCATCATTGGCTCGATCCGACGCGGTTCGATGGCGGACCGAGCTCGGCTCGCCAACGTACCGCTACCCGAGACGGCGCTCAAGTGCCCTCGATGTGATTCCACCAACACGAAGTTCTGTTACTTCAATAACTATAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGACGGTACTGGACTCGCGGTGGCGCCCTTCGGAACGTCCCGGTTGGGGGCGGTTGTCGTCGGAATAAGAAGAACAAAACTAGACGCTCGAAGTCTCCGGTGGCCGGGAACGAAACGCAGCTGAATAACAATAACAATTCAAACTCGCCCACCACTACTACAATTCCCTTGCACAGCAGCACTGAGAATATTATTGGTCATTTACAGCCTCAGCATCCTCACCTTTCGTTGATGGCTTCATTGAATAATTTTTCTCGATATGGGACGACGAATTTAGGGTTGAATTTCAACGAGATCCAGGCTCAATCTGGAGACATTGGGAACGGCGCCCTTCTGAATCATCAGTGGCGCGGTTCCCAAAACTTTCCTCTTTCAGGTGGCCTAGAAACCCCGACCGGGTTGTACCCGTTCCAAATTAGCGACGGCGGCAACAACGACGCAACGAATTCAATCCTACCACCAAATTCAAGGGCAACCCAATTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCAAACTTGGGTGTCAACAATTCAGAGAACAACCAATTTTGGAGCAATGGAAATGGCTGGACAGATCTTTCAGCTATCAGTTCTTCATCAAGTGACCATATTTCTTGCGACTTCAATCATTAA 1008 49.21 MDFSSVPVYLDPPPNWHQQSNHNHHHQISNNGSPQHHHQLLSLPTQQQLPSAPPSHVGGGGGIIGSIRRGSMADRARLANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPVAGNETQLNNNNNSNSPTTTTIPLHSSTENIIGHLQPQHPHLSLMASLNNFSRYGTTNLGLNFNEIQAQSGDIGNGALLNHQWRGSQNFPLSGGLETPTGLYPFQISDGGNNDATNSILPPNSRATQLPPVKIEETQVLNLLKSSNLGVNNSENNQFWSNGNGWTDLSAISSSSSDHISCDFNH 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2320838 2322893 + Maker00005889 Lcy11g0196 646097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0196 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 77 208 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy11g0196 335 ProSiteProfiles Zinc finger Dof-type profile. 88 142 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy11g0196 335 MobiDBLite consensus disorder prediction 150 171 - -
Lcy11g0196 335 ProSitePatterns Zinc finger Dof-type signature. 90 126 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy11g0196 335 MobiDBLite consensus disorder prediction 134 171 - -
Lcy11g0196 335 MobiDBLite consensus disorder prediction 14 39 - -
Lcy11g0196 335 MobiDBLite consensus disorder prediction 11 39 - -
Lcy11g0196 335 Pfam Dof domain, zinc finger 87 142 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0196 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1842 Lcy-Chr10:42711740 Lcy11g0196 Lcy-Chr11:2320838 1.32E-45 dispersed
Lcy11g0196 Lcy-Chr11:2320838 Lcy7g0883 Lcy-Chr7:8810273 3.14E-56 dispersed
Lcy10g1324 Lcy-Chr10:36104615 Lcy11g0196 Lcy-Chr11:2320838 7.43E-29 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy13g0163 Lcy-Chr13:1700137 8.49E-28 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy3g0085 Lcy-Chr3:2155185 7.86E-30 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy5g0212 Lcy-Chr5:2041717 3.80E-53 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy8g1873 Lcy-Chr8:45055169 3.40E-33 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT1G29160 52.7 7.7e-43 171.0
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT1G29160 52.6 3.2e-41 165.6
Lcy5g1831 . 13 170 C2C2-Dof Transcription Factor Family AT2G34140 53.4 4.4e-43 171.8
Lcy1g0269 . 6 158 C2C2-Dof Transcription Factor Family AT2G34140 50.3 9.4e-38 154.1
Lcy10g1842 . 1 136 C2C2-Dof Transcription Factor Family AT2G37590 67.4 1.4e-37 154.5
Lcy11g0196 . 66 140 C2C2-Dof Transcription Factor Family AT2G37590 90.7 4.1e-37 152.9
Lcy2g0570 . 140 491 C2C2-Dof Transcription Factor Family AT3G47500 53.4 2.4e-88 323.6
Lcy10g0543 . 149 514 C2C2-Dof Transcription Factor Family AT3G47500 50.4 6.7e-75 278.9
Lcy11g0196 . 65 140 C2C2-Dof Transcription Factor Family AT5G02460 90.8 2.6e-38 157.1
Lcy1g1448 . 54 127 C2C2-Dof Transcription Factor Family AT5G02460 87.8 8.4e-37 152.1
Lcy5g0212 . 52 134 C2C2-Dof Transcription Factor Family AT3G55370 81.9 2.7e-37 153.7
Lcy2g0489 . 28 323 C2C2-Dof Transcription Factor Family AT5G60850 54.1 5.8e-46 182.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19077 None None None None Lcy TF