Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0222 ATGGGTAGAGGCGGGGAGAACTATGGGAAAAAAGAAATTTTTGCTGCTAACTCCTCGAATAAAGAAACGTACCCTGCCTGGGCGAGGGATGTTCGAGAATGCGCAGAGAAGTACCAAGTGAACCCTGATCTTGGATTATCTTCTGAAGATGTTGAAAAACAGAGAAAGATCTATGGTTTCAATGAATTAGAGAAGCACGAAGGTACTTCGATCTTGAAATTGATTTTGGAACAATTTAATGACACACTAGTTAGGATTCTATTAGCTGCAGCAGTCGTATCTTTTGTTCTTGCGTGGTATGATGGCGAGGAAGGAGGTGAGATGGAGATTACAGCATTTGTGGAGCCTCTAGTTATTTTCTTGATATTGATTGTCAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCCCTTAAAGAAATTCAGTCGGAACAGGCTTCAGTAATACGAAATGGTAAACGAGCTTCAATTGTTGCAAAGGATCTTGTTCCCGGTGATATAGTAGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTATTGCGTTTAATCAGCTCAACTTTTCGGGTTGAGCAGGGGTCCTTGACAGGTGAGAGTGAAGCGGTGAGCAAGACTGCTAAGGCTGTGCCAGAAGATACAGATATACAAGGGAAAAAATGTATGGTTTTTGCAGGGACAACAGTCGTCAATGGAAATTGTATTTGCGTTGTTACCCAGACAGGGATGAGCACTGAACTAGGACAGGTGCATTCTCAGATACAAGAAGCATCCCAGAGTGAAGATGATACGCCATTGAAGAAAAAATTGAATGAGTTTGGAGAGCTTTTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAGTATGTTGATGGGTGGCCAGCAAATTTCAAGTTCTCATTTGAGAAATGTACATATTACTTTGAGATTGCGGTGGCTTTGGCTGTAGCTGCAATTCCAGAAGGTTTGCCTGCAGTTATAACTACATGCTTGGCACTTGGCACCCGGAAGATGGCCCAAAAGAATGCCCTTGTTCGGAAGCTGCCTAGTGTTGAAACTCTTGGTTGTACAACTGTGATATGTTCTGATAAGACTGGTACTCTAACAACTAATCAGATGGCTGTAGCGAAAATTGTGGCTCTTGGTTCTCGTCTTGGTACTCTGCGAGCCTTTGATGTAGAAGGGACTACATATGATCCTACAGATGGAAAAATAATTGGTTGGCTTGGAAGTCAACTGGATGACAATCTGCAAATGTTGGCAAAGATTGCTGCTGTCTGTAATGATGCAGGCGTTGAAAAATCTGGCCATCATTTTGTTGCAAATGGAATGCCTACTGAAGCAGCATTGAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGCTTCCATTAATGGGGATGTCTTGCGATGCTGCCAAGTTTGGAATAAGAACGAGCAACGCATTGCTACTCTAGAGTTTGATCGAGACCGCAAATCTATGGGAGTTATTACTAATTCTAGCTCAGGGAAGAAGTCATTACTTGTGAAGGGTGCTGTTGAAAATCTTTTGGATCGGAGTTCATTTATTCAACTGCTCGATGGATCTATTGTGAAGTTGGACTCAGACTCAAAGAAACAACTATTGGACTATTTGCGTGAGATGTCATCAAGTGCCTTAAGGTGTTTAGGTTTTGCTTACAAGGAAGACCTTCCAGAATTTGCCACTTATAGTAATGGTGACGAAGAACATCCAGCACATCAGCTTTTACTTGACCCGAGCAACTACTCTTCGATTGAAAGTAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTGAAGACTGTAAAGCTGCTGGTATTCGTGTCATGGTTATCACAGGGGACAATCAGAACACAGCTGAAGCTATATGTCGAGAGATAGGTGTATTTGGACAACATGAAGATATAACTTCCAAAAGTTTAACTGGAAAAGAATTCATGGGAATGAGTCGGGAGGATCAACAATCTCATTTAAGACAAGATGGAGGACTTCTTTTCTCAAGGGCTGAACCAAGGCATAAGCAAGAGATAGTAAGATTGCTTAAGGATGATGGTGAAGTTGTTGCAATGACAGGAGACGGAGTCAATGATGCACCTGCCTTGAAGTTGGCTGATATTGGTATTGCGATGGGCATTGCTGGGACAGAGGTTGCGAAGGAAGCCTCCGACATGGTTCTTGCAGATGACAATTTTAGTACAATAGTTGCAGCAGTTGGTGAAGGCAGATCCATTTACAACAATATGAAGGCATTTATCAGGTACATGATTTCCTCAAACATCGGTGAGGTCGCATCGATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAACTTCTCTGGGTTAATCTTGTTACTGATGGACCCCCAGCAACTGCATTGGGTTTTAATCCACCCGATACAGATATAATGAAGAAACCGCCAAGAAAAAGTGACGACTCGTTGATCACGGCCTGGATTTTGTTCCGCTATTTGGTGATTGGACTTTACGTAGGGTTAGCAACTGTAGGAGTATTTATCATTTGGTATACACATGCTTCATTCTTGGGCATCGATCTGTCTGGGGATGGTCACAGTCTGGTCTCTTACTCTCAGCTCGCCAACTGGGGTCAGTGCTCGTCTTGGGAAGGGTTCTCGGTGTCGCCCTTCACGGCTGGGGAACAAGTCTTCAACTTCGATTCAGATCCATGCGAGTACTTCCGTTCAGGCAAGATCAAGGCATCAACCCTCTCACTTTCTGTTTTGGTCGCCATTGAGATGTTCAATTCCCTCAATGCCCTCTCCGAGGATGGAAGCTTGTTGACAATGCCCCCTTGGGTTAATCCATGGCTCCTCCTCGCCATGTCTGTTTCATTCGGCTTGCATTTCTTGATTCTGTATGTGCCATTCCTCGCTCAAATTTTCGGCATTGTCCCTCTCTCCCTGAATGAATGGCTATTGGTCCTGGCCGTGGCGTTGCCTGTGATCATAATTGACGAGATTCTGAAATTCGTGGGAAGGCTTACAAGCGGGTTAAGGACATCTCGACCAAGCCGATCATCAAAGCAGAAATCAGAGTAA 3198 43.71 MGRGGENYGKKEIFAANSSNKETYPAWARDVRECAEKYQVNPDLGLSSEDVEKQRKIYGFNELEKHEGTSILKLILEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQENNAEKALEALKEIQSEQASVIRNGKRASIVAKDLVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMVFAGTTVVNGNCICVVTQTGMSTELGQVHSQIQEASQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRLGTLRAFDVEGTTYDPTDGKIIGWLGSQLDDNLQMLAKIAAVCNDAGVEKSGHHFVANGMPTEAALKVLVEKMGLPEGYDSSSASINGDVLRCCQVWNKNEQRIATLEFDRDRKSMGVITNSSSGKKSLLVKGAVENLLDRSSFIQLLDGSIVKLDSDSKKQLLDYLREMSSSALRCLGFAYKEDLPEFATYSNGDEEHPAHQLLLDPSNYSSIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAICREIGVFGQHEDITSKSLTGKEFMGMSREDQQSHLRQDGGLLFSRAEPRHKQEIVRLLKDDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDTDIMKKPPRKSDDSLITAWILFRYLVIGLYVGLATVGVFIIWYTHASFLGIDLSGDGHSLVSYSQLANWGQCSSWEGFSVSPFTAGEQVFNFDSDPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQIFGIVPLSLNEWLLVLAVALPVIIIDEILKFVGRLTSGLRTSRPSRSSKQKSE 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2859135 2865553 + Maker00005948 Lcy11g0222 646123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0222 1065 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Lcy11g0222 1065 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Lcy11g0222 1065 PRINTS P-type cation-transporting ATPase superfamily signature 733 752 - -
Lcy11g0222 1065 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Lcy11g0222 1065 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Lcy11g0222 1065 PRINTS P-type cation-transporting ATPase superfamily signature 757 769 - -
Lcy11g0222 1065 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Lcy11g0222 1065 Pfam E1-E2 ATPase 147 360 - -
Lcy11g0222 1065 SFLD p-type atpase 361 785 IPR044492 -
Lcy11g0222 1065 Pfam haloacid dehalogenase-like hydrolase 625 747 - -
Lcy11g0222 1065 PANTHER CALCIUM-TRANSPORTING ATPASE 28 1049 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Lcy11g0222 1065 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 390 632 - -
Lcy11g0222 1065 SUPERFAMILY HAD-like 378 837 IPR036412 -
Lcy11g0222 1065 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1046 IPR023298 -
Lcy11g0222 1065 Pfam Cation transport ATPase (P-type) 444 548 - -
Lcy11g0222 1065 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Lcy11g0222 1065 SFLD Haloacid Dehalogenase 361 785 - -
Lcy11g0222 1065 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 797 1051 - -
Lcy11g0222 1065 Gene3D - 77 1046 - -
Lcy11g0222 1065 NCBIfam HAD-IC family P-type ATPase 707 817 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy11g0222 1065 NCBIfam HAD-IC family P-type ATPase 319 401 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy11g0222 1065 NCBIfam HAD-IC family P-type ATPase 118 307 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy11g0222 1065 FunFam Calcium-transporting ATPase, putative 126 262 - -
Lcy11g0222 1065 Pfam Cation transporting ATPase, C-terminus 819 1044 IPR006068 -
Lcy11g0222 1065 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Lcy11g0222 1065 Gene3D - 45 262 - -
Lcy11g0222 1065 Gene3D - 390 632 IPR023299 GO:0000166(InterPro)
Lcy11g0222 1065 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 629 IPR023299 GO:0000166(InterPro)
Lcy11g0222 1065 FunFam Calcium-transporting P-type ATPase, putative 626 778 - -
Lcy11g0222 1065 SUPERFAMILY Calcium ATPase, transduction domain A 149 259 IPR008250 -
Lcy11g0222 1065 Gene3D - 377 778 IPR023214 -
Lcy11g0222 1065 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 250 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0222 Lcy-Chr11:2859135 Lcy3g1566 Lcy-Chr3:42718536 2.00E-106 dispersed
Lcy11g0222 Lcy-Chr11:2859135 Lcy13g2145 Lcy-Chr13:40328862 5.22E-188 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0222 K01537 - csv:101206729 1968.36