Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0257 ATGGCCGATGTTGGTCAGAACAACACCGCTGATTTTCCCGCTCTTCCTACCCATGGCGGCCAATACGTGCAGTACAATATCTTCGGGAATCCCTTCGAAATCACCTCAAAATATCGCCCGCCTATTATGCCTATAGGTCGCGGCGCCTACGGAATCGTCTGTTCGGTTTTGAATTCGGAGACCAACGAGATGGTTGCGGTTAAGAAGATTGCCAACGCGTTTGATAATCATATGGATGCGAAGCGGACGCTCCGTGAGATTAAGCTTCTCCGGCATTTGGATCACGAAAATGTGAGCGAGTCTATCCTTGCAGATGCTAAAATTGTAATAGGCATAAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCCACTGAACTAATGGATACTGATCTTCACCAAATAATCCGCTCCAACCAAACTTTATCAGAAGAGCATTGTCAGATTCTCCGAGGACTCAAATACATACATTCTGCAAATGTTATTCATCGAGACTTGAAACCGAGCAATCTGTTGCTTAATGCTAACTGTGATCTTAAAATATGTGACTTTGGTCTTGCTCGTCCAACTTCGGAAAATGAATGTATGACAGAATATGTCGTCACAAGATGGTATAGGGCACCTGAGCTTCTATTGAACTCTGATTATACAGCTGCTATAGATATATGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAACAGAAGGCCTTTATTTCCAGGCAGGGATCATGTGCATCAGATGCGTCTATTAACTGAGCTTCTTGGCACACCAACTGAGTCAGATCTTGGTTTCATTAGGAACGAGGACTCAAAAAGATATCTCCGGCAGCTACCTCCACATCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCATTGGCAATTGATCTTGTGGATAAGATGTTGACGTTTGACCCAACAAAGAGAATTACAGTTGAAGAAGCGTTGGCTCATCCATACCTAGAAAGATTGCATGACATAGCCGACGAGCCGGTTTGCCCGGAGCCATTTTCGTTCGAGTTTGAGCAACAATTCCTAGATGAGGAGCAAATGAAGGAGATGATTTACAGAGAGGCATTGGCACTCAATCCAGAATTTGCATGA 1131 43.94 MADVGQNNTADFPALPTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVSESILADAKIVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQTLSEEHCQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDKMLTFDPTKRITVEEALAHPYLERLHDIADEPVCPEPFSFEFEQQFLDEEQMKEMIYREALALNPEFA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3699002 3703209 - Maker00027548 Lcy11g0257 646158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0257 376 Pfam Protein kinase domain 44 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0257 376 Gene3D Phosphorylase Kinase; domain 1 22 367 - -
Lcy11g0257 376 ProSitePatterns MAP kinase signature. 74 183 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0257 376 ProSiteProfiles Protein kinase domain profile. 39 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0257 376 SMART serkin_6 39 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0257 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g0257 376 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 32 368 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy11g0257 376 FunFam Mitogen-activated protein kinase 134 357 - -
Lcy11g0257 376 FunFam Mitogen-activated protein kinase 24 144 - -
Lcy11g0257 376 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524(InterPro)
Lcy11g0257 376 SUPERFAMILY Protein kinase-like (PK-like) 44 337 IPR011009 -
Lcy11g0257 376 Gene3D Transferase(Phosphotransferase) domain 1 134 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0257 Lcy-Chr11:3699002 Lcy13g0741 Lcy-Chr13:11249957 3.19E-182 dispersed
Lcy13g1675 Lcy-Chr13:35711936 Lcy11g0257 Lcy-Chr11:3699002 9.40E-205 transposed
Lcy11g0257 Lcy-Chr11:3699002 Lcy4g1564 Lcy-Chr4:39530662 1.10E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65439 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0257 K20536 - csv:101202796 704.901