Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0267 ATGGAGAACGATTCTTCGGCTATGGAGATCAAGGGGCTTCCCACCTACGACGGCAAGTACTTGCTCTACAACGTTCTCGGCAACTTCTTCGAGGTCTCTGCCAAGTACGCCCCTTCAATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACGAATTTGGAGACGAAAGATGAGGTAGCGATAAAGAAGATAGGGAATGCTTTTGATAACAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACCGATCTGCATCAGATCATTCGCTCTACCCAGGCTCTGACCGATGATCACTGTCAGTATTTCCTATACCAGTTACTGCGAGGTTTGAAATATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACCTGCTTCTCAATGCAAACTGCGACCTGAAGATTTGTGACTTTGGCTTAGCAAGGACAACATCGGAGACAGATTTCATGACAGAATATGTTGTAACCCGATGGTATCGAGCCCCTGAGCTACTACTTAACACTTCTGAATACACTGCAGCGATAGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCTCTCTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACCGAGTTGCTAGGTTCACCAGATGATTCAGATCTTGGGTTTCTCAGAAGCGATAATGCAAAGAAGTATGTTAAGCAACTTCCTCATTTCCCAAAGCAACCGCTGATCGAAAAGTTCCCAGATCTTCCTCCACTGGCAGTCGATCTTGCAGAGAGGATGCTGCTCTTTGATCCGAGCAAGAGAATAACTGTCGAGGAGGCAATGAATCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAACAGGCATCCTTGGATGAAGAAGATATAAAAGAGCTTATATGGAGAGAGTCTCTCAAGTTCAATCCTAATCACATGTAG 1110 43.06 MENDSSAMEIKGLPTYDGKYLLYNVLGNFFEVSAKYAPSIQPVGRGAYGIVCCTTNLETKDEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNAKKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLKFNPNHM 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3913183 3916453 + Maker00027556 Lcy11g0267 646168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0267 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g0267 369 SMART serkin_6 40 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0267 369 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0267 369 FunFam Mitogen-activated protein kinase 22 131 - -
Lcy11g0267 369 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0267 369 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
Lcy11g0267 369 SUPERFAMILY Protein kinase-like (PK-like) 40 329 IPR011009 -
Lcy11g0267 369 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Lcy11g0267 369 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Lcy11g0267 369 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0267 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 360 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lcy11g0267 369 FunFam Mitogen-activated protein kinase 121 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0267 Lcy-Chr11:3913183 Lcy12g1620 Lcy-Chr12:36495400 6.80E-211 dispersed
Lcy11g0267 Lcy-Chr11:3913183 Lcy13g0741 Lcy-Chr13:11249957 1.80E-212 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65440 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0267 K04371 - csv:101218403 724.161