Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0267 | ATGGAGAACGATTCTTCGGCTATGGAGATCAAGGGGCTTCCCACCTACGACGGCAAGTACTTGCTCTACAACGTTCTCGGCAACTTCTTCGAGGTCTCTGCCAAGTACGCCCCTTCAATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACGAATTTGGAGACGAAAGATGAGGTAGCGATAAAGAAGATAGGGAATGCTTTTGATAACAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTTCTATGCCATATGGACCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACCGATCTGCATCAGATCATTCGCTCTACCCAGGCTCTGACCGATGATCACTGTCAGTATTTCCTATACCAGTTACTGCGAGGTTTGAAATATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACCTGCTTCTCAATGCAAACTGCGACCTGAAGATTTGTGACTTTGGCTTAGCAAGGACAACATCGGAGACAGATTTCATGACAGAATATGTTGTAACCCGATGGTATCGAGCCCCTGAGCTACTACTTAACACTTCTGAATACACTGCAGCGATAGATATTTGGTCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCTCTCTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACCGAGTTGCTAGGTTCACCAGATGATTCAGATCTTGGGTTTCTCAGAAGCGATAATGCAAAGAAGTATGTTAAGCAACTTCCTCATTTCCCAAAGCAACCGCTGATCGAAAAGTTCCCAGATCTTCCTCCACTGGCAGTCGATCTTGCAGAGAGGATGCTGCTCTTTGATCCGAGCAAGAGAATAACTGTCGAGGAGGCAATGAATCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTTGAACAGGCATCCTTGGATGAAGAAGATATAAAAGAGCTTATATGGAGAGAGTCTCTCAAGTTCAATCCTAATCACATGTAG | 1110 | 43.06 | MENDSSAMEIKGLPTYDGKYLLYNVLGNFFEVSAKYAPSIQPVGRGAYGIVCCTTNLETKDEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNAKKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLKFNPNHM | 369 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3913183 | 3916453 | + | Maker00027556 | Lcy11g0267 | 646168 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0267 | 369 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy11g0267 | 369 | SMART | serkin_6 | 40 | 323 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g0267 | 369 | Pfam | Protein kinase domain | 41 | 323 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g0267 | 369 | FunFam | Mitogen-activated protein kinase | 22 | 131 | - | - | |
Lcy11g0267 | 369 | ProSitePatterns | MAP kinase signature. | 72 | 175 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g0267 | 369 | ProSitePatterns | Protein kinases ATP-binding region signature. | 43 | 67 | IPR017441 | GO:0005524(InterPro) | |
Lcy11g0267 | 369 | SUPERFAMILY | Protein kinase-like (PK-like) | 40 | 329 | IPR011009 | - | |
Lcy11g0267 | 369 | Gene3D | Phosphorylase Kinase; domain 1 | 20 | 360 | - | - | |
Lcy11g0267 | 369 | Gene3D | Transferase(Phosphotransferase) domain 1 | 121 | 350 | - | - | |
Lcy11g0267 | 369 | ProSiteProfiles | Protein kinase domain profile. | 37 | 323 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy11g0267 | 369 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 30 | 360 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Lcy11g0267 | 369 | FunFam | Mitogen-activated protein kinase | 121 | 350 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0267 | Lcy-Chr11:3913183 | Lcy12g1620 | Lcy-Chr12:36495400 | 6.80E-211 | dispersed | |
Lcy11g0267 | Lcy-Chr11:3913183 | Lcy13g0741 | Lcy-Chr13:11249957 | 1.80E-212 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65440 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0267 | K04371 | - | csv:101218403 | 724.161 |