Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0271 ATGGGTTGCTTTCGTTGCACCGGTTCGTCGAGCAAGAAATCGGAGAATATCGAAGAAAACCATCCCAATACCTTCAATTCCAAAACCCAGAAGCCCGATGATCGAACGTCTTCAGATAAAGCCAAAATAAATTCAAGTTTGGCCTTGAAGAAGGATTCTGATGTGAAGGTGGTTGTGTCTAAAAATGACCAATTGTCTTTAGATGTAAAGAAATTGAATTTGAAAGATGAGGTTTCTAAAGAAGGAGAAACCAATGACCGTGCCAAGACTTTTACATTTCAAGAACTTGCCGCGGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGATATTTGCAGCAAGTTAATGAGGTTGTAGCAATCAAACAACTTGACCGCAATGGACTTCAAGGAATTCGGGAGTTCGTTGTGGAAGTCTTGACTTTAAGTCTAGCTGATCACCCTAACCTCGTAAAACTCATTGGCTTTTGTGCTGAAGGGGATCAGAGGCTGTTGGTTTATGAATACATGCCATTGGGATCATTGGAAAATCATTTACATGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCTGCAAGGGGTTTGGAGTATTTGCATGAAAAGATGAAGCCCCCAGTTATATATCGTGATCTGAAATGCTCGAACATTTTGCTTGGTGAAGGGTATCATCCAAAGCTATCTGATTTTGGATTAGCTAAAGTAGGTCCCAGTGGGGATAAAACCCATGTTTCAACCAGGGTTATGGGCACATATGGTTATTGTGCGCCTGATTATGCAATGACGGGCCAGCTTACATTCAAATCCGATATTTATAGCTTTGGCGTTGTTTTGTTGGAACTCATCACTGGCAGAAAAGCAATTGATCATTCAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCGCGACCCTTGTTCAGAGACCGAAAGAAGTTCTCACAAATGATTGACCCGGTGCTCCAAGGACAGTATCCCGTGAGAGGATTATACCAATCTCTGGCCATTGCTGCAATGTGTGTTCAGGAGCAACCGAACATGCGGCCAGTTATATCTGATGTGGTTACCGCTCTAAACTACCTAGCATCCCAGAAATATGATCCCCAAACTCAACCAAACCAGAGCTCCCAAAAGAGACCATCTTCTCCTAAACAGGAACAGGACAATGACAAGAGGGAAACTTTAGACGACGGGTCGGAGAGAGTGAGGCGGGAGGATACATTATAG 1284 43.38 MGCFRCTGSSSKKSENIEENHPNTFNSKTQKPDDRTSSDKAKINSSLALKKDSDVKVVVSKNDQLSLDVKKLNLKDEVSKEGETNDRAKTFTFQELAAATGNFRSDCFLGEGGFGKVYKGYLQQVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMIDPVLQGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQTQPNQSSQKRPSSPKQEQDNDKRETLDDGSERVRREDTL 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3997190 4000911 + Maker00027514 Lcy11g0271 646172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0271 427 Gene3D Transferase(Phosphotransferase) domain 1 180 406 - -
Lcy11g0271 427 FunFam Serine/threonine-protein kinase PBS1 180 396 - -
Lcy11g0271 427 MobiDBLite consensus disorder prediction 402 427 - -
Lcy11g0271 427 MobiDBLite consensus disorder prediction 384 401 - -
Lcy11g0271 427 SUPERFAMILY Protein kinase-like (PK-like) 89 400 IPR011009 -
Lcy11g0271 427 Pfam Protein kinase domain 108 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0271 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy11g0271 427 Gene3D Phosphorylase Kinase; domain 1 62 179 - -
Lcy11g0271 427 CDD STKc_IRAK 109 378 - -
Lcy11g0271 427 MobiDBLite consensus disorder prediction 384 427 - -
Lcy11g0271 427 SMART serkin_6 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0271 427 MobiDBLite consensus disorder prediction 1 43 - -
Lcy11g0271 427 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy11g0271 427 PANTHER OS07G0668900 PROTEIN 47 407 - -
Lcy11g0271 427 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Lcy11g0271 427 FunFam probable serine/threonine-protein kinase RLCKVII 75 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0271 Lcy-Chr11:3997190 Lcy7g0802 Lcy-Chr7:7768612 2.00E-182 dispersed
Lcy7g0150 Lcy-Chr7:1361085 Lcy11g0271 Lcy-Chr11:3997190 1.07E-60 dispersed
Lcy11g0271 Lcy-Chr11:3997190 Lcy5g1291 Lcy-Chr5:30557563 2.24E-64 wgd
Lcy11g0271 Lcy-Chr11:3997190 Lcy8g1802 Lcy-Chr8:44440574 4.76E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65441 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0271 - - - 0.0