Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy11g0296 | ATGTCTCCGAAGTCTTTAATGGCGAAGAATAGATTCGTGTGCGAGATATGCAACAAGGGGTTTCAAAGGGACCAGAATTTGCAGCTCCACCGACGCGGTCACAACCTACCGTGGAAGCTCCGACAGAGGACGAGCAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTGACCGGAATCAAGAAGCACTACAGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAGTATGCAGTTCAGTCGGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAATGCAAGAATCTCCTCAGTTTCAACTATAAATCATCATCATCATCATCCAACCTTCATAAACAACAACAACACTCTTCAAAACAATCCCACCACAATCCCCCATCAGTTTTCTCCACCTCCTTCCCTACTTTTCCCACCAAACTTCGCCGCCACCGTCGTCGCCGCCGATCAAACCTCCACCACCAACAATTTCCCTAACTTTATCTCCGACCACGACGACGACCACAAGCCACTGCCACTGCCACCGTCGTCGTCGTCGCAGCTCCCGCTCTGGCTCGACCCTCCACCGAACCCCAACCCCTTCTTCTCCGCCCCCACCGCCCACGGCTTCTCCGACCACCCCGTGTTCTTGCCCGAAAATCACCACCCTTTCTTGTCGGAGCCGTTAACGACGGCCTCCTCGTACACCATGTCCGCCACCGCACTCCTCCAGAAAGCCGCCCAAATGGGGCCGACCAGAACTCCGCCTGCCACTCCGCCGATTCTATTCAACACCAGTGCTGCCAGCGCCGCCGCTGCGGCGTATGGGATGAACAACTCCGCCACGGTGTTATCGGACGGGCGTCCGCGGATGAAGCCATTGATGGGCGGAGCAAAGGAAGACATTGGAGGGCAGAATTTGACCAGGGATTTTCTTGGCGTCGGAAACCAGCTGGTGCATCTCACGGCGGTGGGCTCCAATCAATACAGTGATCAGAGCCGCCGCCATTAG | 1140 | 55.0 | MSPKSLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENARISSVSTINHHHHHPTFINNNNTLQNNPTTIPHQFSPPPSLLFPPNFAATVVAADQTSTTNNFPNFISDHDDDHKPLPLPPSSSSQLPLWLDPPPNPNPFFSAPTAHGFSDHPVFLPENHHPFLSEPLTTASSYTMSATALLQKAAQMGPTRTPPATPPILFNTSAASAAAAAYGMNNSATVLSDGRPRMKPLMGGAKEDIGGQNLTRDFLGVGNQLVHLTAVGSNQYSDQSRRH | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4669277 | 4671196 | - | Maker00032623 | Lcy11g0296 | 646197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy11g0296 | 379 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 66 | 145 | - | - | |
Lcy11g0296 | 379 | Gene3D | Classic Zinc Finger | 46 | 136 | - | - | |
Lcy11g0296 | 379 | MobiDBLite | consensus disorder prediction | 207 | 240 | - | - | |
Lcy11g0296 | 379 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 34 | IPR013087 | - | |
Lcy11g0296 | 379 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 12 | 34 | IPR013087 | - | |
Lcy11g0296 | 379 | SMART | c2h2final6 | 88 | 108 | IPR013087 | - | |
Lcy11g0296 | 379 | SMART | c2h2final6 | 53 | 83 | IPR013087 | - | |
Lcy11g0296 | 379 | SMART | c2h2final6 | 12 | 34 | IPR013087 | - | |
Lcy11g0296 | 379 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 114 | 151 | - | - | |
Lcy11g0296 | 379 | Gene3D | Classic Zinc Finger | 8 | 35 | - | - | |
Lcy11g0296 | 379 | MobiDBLite | consensus disorder prediction | 225 | 240 | - | - | |
Lcy11g0296 | 379 | FunFam | Zinc finger protein MAGPIE | 8 | 35 | - | - | |
Lcy11g0296 | 379 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 87 | 111 | - | - | |
Lcy11g0296 | 379 | Pfam | Zinc finger, C2H2 type | 12 | 34 | IPR013087 | - | |
Lcy11g0296 | 379 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 49 | 83 | - | - | |
Lcy11g0296 | 379 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 365 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Lcy11g0296 | 379 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 108 | IPR036236 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0296 | Lcy-Chr11:4669277 | Lcy1g0727 | Lcy-Chr1:6217705 | 3.30E-94 | dispersed | |
Lcy11g0296 | Lcy-Chr11:4669277 | Lcy5g0280 | Lcy-Chr5:2632744 | 9.51E-97 | transposed | |
Lcy11g0296 | Lcy-Chr11:4669277 | Lcy1g1384 | Lcy-Chr1:13398972 | 2.08E-97 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19083 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy11g0296 | K25870 | - | csv:101212420 | 490.73 |