Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0296 ATGTCTCCGAAGTCTTTAATGGCGAAGAATAGATTCGTGTGCGAGATATGCAACAAGGGGTTTCAAAGGGACCAGAATTTGCAGCTCCACCGACGCGGTCACAACCTACCGTGGAAGCTCCGACAGAGGACGAGCAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTGACCGGAATCAAGAAGCACTACAGCAGGAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAGTATGCAGTTCAGTCGGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCATTAGCTGAAGAAAATGCAAGAATCTCCTCAGTTTCAACTATAAATCATCATCATCATCATCCAACCTTCATAAACAACAACAACACTCTTCAAAACAATCCCACCACAATCCCCCATCAGTTTTCTCCACCTCCTTCCCTACTTTTCCCACCAAACTTCGCCGCCACCGTCGTCGCCGCCGATCAAACCTCCACCACCAACAATTTCCCTAACTTTATCTCCGACCACGACGACGACCACAAGCCACTGCCACTGCCACCGTCGTCGTCGTCGCAGCTCCCGCTCTGGCTCGACCCTCCACCGAACCCCAACCCCTTCTTCTCCGCCCCCACCGCCCACGGCTTCTCCGACCACCCCGTGTTCTTGCCCGAAAATCACCACCCTTTCTTGTCGGAGCCGTTAACGACGGCCTCCTCGTACACCATGTCCGCCACCGCACTCCTCCAGAAAGCCGCCCAAATGGGGCCGACCAGAACTCCGCCTGCCACTCCGCCGATTCTATTCAACACCAGTGCTGCCAGCGCCGCCGCTGCGGCGTATGGGATGAACAACTCCGCCACGGTGTTATCGGACGGGCGTCCGCGGATGAAGCCATTGATGGGCGGAGCAAAGGAAGACATTGGAGGGCAGAATTTGACCAGGGATTTTCTTGGCGTCGGAAACCAGCTGGTGCATCTCACGGCGGTGGGCTCCAATCAATACAGTGATCAGAGCCGCCGCCATTAG 1140 55.0 MSPKSLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENARISSVSTINHHHHHPTFINNNNTLQNNPTTIPHQFSPPPSLLFPPNFAATVVAADQTSTTNNFPNFISDHDDDHKPLPLPPSSSSQLPLWLDPPPNPNPFFSAPTAHGFSDHPVFLPENHHPFLSEPLTTASSYTMSATALLQKAAQMGPTRTPPATPPILFNTSAASAAAAAYGMNNSATVLSDGRPRMKPLMGGAKEDIGGQNLTRDFLGVGNQLVHLTAVGSNQYSDQSRRH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4669277 4671196 - Maker00032623 Lcy11g0296 646197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0296 379 FunFam protein indeterminate-domain 5, chloroplastic-like 66 145 - -
Lcy11g0296 379 Gene3D Classic Zinc Finger 46 136 - -
Lcy11g0296 379 MobiDBLite consensus disorder prediction 207 240 - -
Lcy11g0296 379 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lcy11g0296 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Lcy11g0296 379 SMART c2h2final6 88 108 IPR013087 -
Lcy11g0296 379 SMART c2h2final6 53 83 IPR013087 -
Lcy11g0296 379 SMART c2h2final6 12 34 IPR013087 -
Lcy11g0296 379 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 114 151 - -
Lcy11g0296 379 Gene3D Classic Zinc Finger 8 35 - -
Lcy11g0296 379 MobiDBLite consensus disorder prediction 225 240 - -
Lcy11g0296 379 FunFam Zinc finger protein MAGPIE 8 35 - -
Lcy11g0296 379 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 87 111 - -
Lcy11g0296 379 Pfam Zinc finger, C2H2 type 12 34 IPR013087 -
Lcy11g0296 379 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 49 83 - -
Lcy11g0296 379 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 365 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy11g0296 379 SUPERFAMILY beta-beta-alpha zinc fingers 11 108 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0296 Lcy-Chr11:4669277 Lcy1g0727 Lcy-Chr1:6217705 3.30E-94 dispersed
Lcy11g0296 Lcy-Chr11:4669277 Lcy5g0280 Lcy-Chr5:2632744 9.51E-97 transposed
Lcy11g0296 Lcy-Chr11:4669277 Lcy1g1384 Lcy-Chr1:13398972 2.08E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19083 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0296 K25870 - csv:101212420 490.73