Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0297 ATGCTTAAGTCAACAAGCAGAACGATGGGAAGCAAGAGAGAAAGAGTGTTCGAAGGCGATCCAGGACTGAATCAAGTGAAACCGGGGTGGCCAGGGGCACCAGGGACCGAGGCAGAAGGACTCGGCCCACGCGAGTGGGCCGAGTGCTCCTTGCATATCGAGTTTGGTAGCTCATCGATGGCGGCTGCAGGCAGTGGCAAGTCACTCGAGCAAACGCCGACGTGGGCGGTTGCCGTTGTTTGCTTCGTTTTGCTTCTCATCTCCATCGTCATCGAATTCAGTATCCACCTCATCGGAAAGTGGTTCAAGAAGAGACACAAACGGGCCTTGTTCGAAGCACTAGAGAAGATCAAATCAGAGCTTATGTTATTGGGATTCATATCACTGCTTCTGACAGTGGGGCAAGGTCCAATCTCAGACATCTGCATCCCCGAACATGTGGCAGCCACGTGGCATCCATGTAGGAAGGAGAAAGAAATGGAGATGAACAAAGAGATGGAAAAATCAGTGGAACATTGGGATACTAATGGCCGGAGACTCCTCGACCTCGCCGGAATTGGTGGAAGTTTCCGGCGAAAGTTGGCCGCAGCCGGAGGAGCCGACAAGTGTGCCGCCAAGGGTCAAGTGTCATTTATTTCTGCAGAAGGAATTCATCAGCTTCATATCTTCATCTTTGTGTTGGCTGTTTTCCATGTTCTCTACTGTGTTCTAACTTATGCTTTTGCTAGAGCAAAGATGAGGAGTTGGAAAACCTGGGAAAAGGAAACCAAAACCGCAGAATACCAGTTCTCACACGATCCTGAGAGATTCAGATTTGCAAGAGACACTTCGTTTGGGAGAAGACACTTGAGCTTCTGGACCAAGAATCCGTTTCTTATGTGGATAGTTTGTTTCTTCAGGCAGTTTGTAAGATCAGTTCCAAAAGTTGATTATTTGACATTGAGACATGGGTTTATAATGGCACATTTGGCACCTCAAAGCCATACGCAATTTGACTTCCAAAAATATATTAATCGCTCCCTTGAGGAGGACTTCAAAGTTGTTGTAGGAATCAGCCCACCAATATGGTTCTTCGCTGTGCTGTTTCTCCTCTCAAACACTCACGGGACGAAGTTGCAGGTGATAATAACGAAGATGGCGCTGAGAATACAGGAGAGAGGGGAAGTGGTGAAGGGAGTGCCGGTGGTGGAGCCTGGCGATGACCTTTTCTGGTTCAATCGCCCTCGCCTTGTTCTTTATCTCATCAACTTTGTTCTCTTTCAAAATGCCTTTCAAGTTGCCTTCTTTGCTTGGACTTGGTATGAGTTCGGGTTGAGTTCTTGCTTCCATGAGCATATAGAGGATGTGGTGATCAGAATCTCAATGGGGGTGATTGTACAAATCCTTTGCAGTTATGTTACTCTACCTCTTTATGCACTGGTTACTCAGATGGGTTCAACAATGAAGCCAACTATATTCAATGAGAGGGTGGCAGCAGCCCTTCGCAATTGGTACCATTCGGCTCGGAAGCACATCAAACACAATCGCGGTTCGATCACCCCGATGTCGAGCCGACCCACCACTCCCACTCACCACATGTCACCGGTCCACCTTCTCCGCCATCACAAGAGTGAACTCGATAGCTTCCACACATCTCCAAGAAGGTCGACACTTGACACTGATCGTTGGGATAATGATTCGCCGTCCCCGTCCCATCATGTTGATGGTTCGTCTTCGTCACAACCCCACATCGAGATGGGAGCCTATGAAAGAGATTCAAATGAACCAGGTTCGGTTCAAATTGACCCGGTTCAGCAGCCACGAACCCGCACTCAGCATACGATTGATATTGGCACCAAAGACTTTTCCTTTGATAGAGTTGAATGA 1866 48.07 MLKSTSRTMGSKRERVFEGDPGLNQVKPGWPGAPGTEAEGLGPREWAECSLHIEFGSSSMAAAGSGKSLEQTPTWAVAVVCFVLLLISIVIEFSIHLIGKWFKKRHKRALFEALEKIKSELMLLGFISLLLTVGQGPISDICIPEHVAATWHPCRKEKEMEMNKEMEKSVEHWDTNGRRLLDLAGIGGSFRRKLAAAGGADKCAAKGQVSFISAEGIHQLHIFIFVLAVFHVLYCVLTYAFARAKMRSWKTWEKETKTAEYQFSHDPERFRFARDTSFGRRHLSFWTKNPFLMWIVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHTQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLVLYLINFVLFQNAFQVAFFAWTWYEFGLSSCFHEHIEDVVIRISMGVIVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAAALRNWYHSARKHIKHNRGSITPMSSRPTTPTHHMSPVHLLRHHKSELDSFHTSPRRSTLDTDRWDNDSPSPSHHVDGSSSSQPHIEMGAYERDSNEPGSVQIDPVQQPRTRTQHTIDIGTKDFSFDRVE 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4760616 4767938 - Maker00032768 Lcy11g0297 646198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0297 621 MobiDBLite consensus disorder prediction 1 21 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 539 621 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 539 562 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 563 577 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 591 611 - -
Lcy11g0297 621 PANTHER MLO-LIKE PROTEIN 1 62 566 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy11g0297 621 Pfam Mlo family 67 369 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy11g0297 621 Pfam Mlo family 369 535 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0297 K08472 - - csv:101217225 993.416
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0297 Lcy-Chr11:4760616 Lcy8g1891 Lcy-Chr8:45201927 3.25E-209 dispersed
Lcy11g0297 Lcy-Chr11:4760616 Lcy11g0298 Lcy-Chr11:4832009 2.69E-147 tandem
Lcy10g1948 Lcy-Chr10:43531013 Lcy11g0297 Lcy-Chr11:4760616 2.00E-83 transposed
Lcy13g0561 Lcy-Chr13:7109589 Lcy11g0297 Lcy-Chr11:4760616 4.99E-76 transposed
Lcy6g0576 Lcy-Chr6:5470583 Lcy11g0297 Lcy-Chr11:4760616 2.32E-79 transposed
Lcy11g0297 Lcy-Chr11:4760616 Lcy8g0111 Lcy-Chr8:2592769 1.12E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g290 . Blo03g01272 Bda02g00768 . Bpe01g00178 Bpe08g01330 . . Cmo13g00190 . Cma01g00538 . . Car13g00156 . Cpe05g00830 . Bhi08g00292 . . . Hepe10g1101 . Lcy11g0297 Cla02g02050 Cam02g2174 Cec02g2213 Cco02g2253 Clacu02g2159 Cmu02g2096 Cre02g2410 . . . . . . Chy11g01330 . . Blo14g00166 Bda07g00625 Bda09g00185 . . Bma07g00138 . Sed01g0995 Cmo02g00883 Cmo20g00511 Cma02g00883 Cma20g00477 . Car20g00418 . . Bhi10g00563 Tan05g0268 Cmetu12g1399 . Hepe08g0876 . . . . . . . . . . Csa01g01295 Chy12g00872 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1948 . 9 510 MLO family AT5G53760 67.9 2.0e-196 682.9
Lcy9g1288 . 95 464 MLO family AT5G53760 68.8 1.5e-135 480.7
Lcy11g0298 . 10 475 MLO family AT3G45290 54.5 7.4e-139 491.5
Lcy10g1948 . 9 509 MLO family AT1G26700 66.7 2.9e-189 659.1
Lcy9g1288 . 95 464 MLO family AT1G26700 65.6 7.3e-132 468.4
Lcy11g0297 . 67 576 MLO family AT2G39200 60.5 4.1e-178 622.1
Lcy7g0665 . 4 413 MLO family AT2G39200 54.7 1.4e-141 500.7
Lcy8g1891 . 8 465 MLO family AT2G39200 55.5 2.8e-134 476.5
Lcy11g0297 . 67 456 MLO family AT1G61560 64.5 7.1e-148 521.2
Lcy13g2270 . 10 413 MLO family AT1G61560 50.5 8.2e-112 401.4
Lcy7g0665 . 4 330 MLO family AT1G61560 53.2 2.0e-110 396.7
Lcy1g0545 . 28 430 MLO family AT1G61560 51.9 3.5e-110 396.0
Lcy8g1891 . 8 376 MLO family AT1G61560 51.0 9.4e-100 361.3
Lcy1g0545 . 10 496 MLO family AT2G17430 59.1 5.4e-156 548.5
Lcy6g2364 . 56 548 MLO family AT2G17430 58.9 4.3e-153 538.9
Lcy13g2270 . 2 477 MLO family AT2G17430 59.1 4.3e-153 538.9
Lcy6g2364 . 33 634 MLO family AT2G17480 58.1 7.7e-180 627.9
Lcy1g0545 . 28 584 MLO family AT2G17480 59.7 2.9e-179 625.9
Lcy13g2270 . 12 462 MLO family AT2G17480 61.6 4.1e-157 552.4
Lcy11g0297 . 67 503 MLO family AT2G17480 51.3 1.6e-121 434.1
Lcy13g2270 . 12 378 MLO family AT1G42560 62.2 5.2e-129 458.4
Lcy1g0545 . 28 394 MLO family AT1G42560 58.6 1.0e-116 417.5
Lcy6g2364 . 56 447 MLO family AT1G42560 51.6 1.2e-106 384.0
Lcy8g0111 . 17 187 MLO family AT4G24250 54.4 3.5e-43 173.3
Lcy6g2364 . 54 447 MLO family AT5G65970 60.2 9.8e-133 471.1
Lcy1g0545 . 8 395 MLO family AT5G65970 63.2 4.9e-132 468.8
Lcy13g2270 . 9 378 MLO family AT5G65970 60.4 2.0e-122 436.8
Lcy13g2270 . 2 535 MLO family AT2G33670 60.9 6.8e-177 617.8
Lcy1g0545 . 28 508 MLO family AT2G33670 56.6 4.4e-144 508.8
Lcy6g2364 . 56 530 MLO family AT2G33670 54.1 1.1e-134 477.6
Lcy11g0297 . 122 546 MLO family AT1G11310 61.8 7.7e-152 534.6
Lcy7g0665 . 60 435 MLO family AT1G11310 54.2 4.0e-124 442.6
Lcy13g0561 . 1 429 MLO family AT4G02600 58.1 1.7e-154 543.5
Lcy6g0576 . 3 614 MLO family AT1G11000 62.2 3.6e-206 715.3
Lcy13g0561 . 1 429 MLO family AT4G02600 58.1 1.7e-154 543.5
Lcy11g0297 . 122 546 MLO family AT1G11310 61.8 7.7e-152 534.6
Lcy7g0665 . 60 435 MLO family AT1G11310 54.2 4.0e-124 442.6
Lcy11g0298 . 10 475 MLO family AT3G45290 54.5 7.4e-139 491.5
Lcy6g0576 . 3 614 MLO family AT1G11000 62.2 3.6e-206 715.3
Lcy13g2270 . 2 535 MLO family AT2G33670 60.9 6.8e-177 617.8
Lcy1g0545 . 28 508 MLO family AT2G33670 56.6 4.4e-144 508.8
Lcy6g2364 . 56 530 MLO family AT2G33670 54.1 1.1e-134 477.6
Lcy11g0297 . 67 456 MLO family AT1G61560 64.5 7.1e-148 521.2
Lcy13g2270 . 10 413 MLO family AT1G61560 50.5 8.2e-112 401.4
Lcy7g0665 . 4 330 MLO family AT1G61560 53.2 2.0e-110 396.7
Lcy1g0545 . 28 430 MLO family AT1G61560 51.9 3.5e-110 396.0
Lcy8g1891 . 8 376 MLO family AT1G61560 51.0 9.4e-100 361.3
Lcy1g0545 . 10 496 MLO family AT2G17430 59.1 5.4e-156 548.5
Lcy6g2364 . 56 548 MLO family AT2G17430 58.9 4.3e-153 538.9
Lcy13g2270 . 2 477 MLO family AT2G17430 59.1 4.3e-153 538.9
Lcy6g2364 . 33 634 MLO family AT2G17480 58.1 7.7e-180 627.9
Lcy1g0545 . 28 584 MLO family AT2G17480 59.7 2.9e-179 625.9
Lcy13g2270 . 12 462 MLO family AT2G17480 61.6 4.1e-157 552.4
Lcy11g0297 . 67 503 MLO family AT2G17480 51.3 1.6e-121 434.1
Lcy13g2270 . 12 378 MLO family AT1G42560 62.2 5.2e-129 458.4
Lcy1g0545 . 28 394 MLO family AT1G42560 58.6 1.0e-116 417.5
Lcy6g2364 . 56 447 MLO family AT1G42560 51.6 1.2e-106 384.0
Lcy6g2364 . 54 447 MLO family AT5G65970 60.2 9.8e-133 471.1
Lcy1g0545 . 8 395 MLO family AT5G65970 63.2 4.9e-132 468.8
Lcy13g2270 . 9 378 MLO family AT5G65970 60.4 2.0e-122 436.8
Lcy10g1948 . 9 510 MLO family AT5G53760 67.9 2.0e-196 682.9
Lcy9g1288 . 95 464 MLO family AT5G53760 68.8 1.5e-135 480.7
Lcy11g0297 . 67 576 MLO family AT2G39200 60.5 4.1e-178 622.1
Lcy7g0665 . 4 413 MLO family AT2G39200 54.7 1.4e-141 500.7
Lcy8g1891 . 8 465 MLO family AT2G39200 55.5 2.8e-134 476.5
Lcy8g0111 . 17 187 MLO family AT4G24250 54.4 3.5e-43 173.3
Lcy10g1948 . 9 509 MLO family AT1G26700 66.7 2.9e-189 659.1
Lcy9g1288 . 95 464 MLO family AT1G26700 65.6 7.3e-132 468.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001805 3 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 2 4 68