Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0297 ATGCTTAAGTCAACAAGCAGAACGATGGGAAGCAAGAGAGAAAGAGTGTTCGAAGGCGATCCAGGACTGAATCAAGTGAAACCGGGGTGGCCAGGGGCACCAGGGACCGAGGCAGAAGGACTCGGCCCACGCGAGTGGGCCGAGTGCTCCTTGCATATCGAGTTTGGTAGCTCATCGATGGCGGCTGCAGGCAGTGGCAAGTCACTCGAGCAAACGCCGACGTGGGCGGTTGCCGTTGTTTGCTTCGTTTTGCTTCTCATCTCCATCGTCATCGAATTCAGTATCCACCTCATCGGAAAGTGGTTCAAGAAGAGACACAAACGGGCCTTGTTCGAAGCACTAGAGAAGATCAAATCAGAGCTTATGTTATTGGGATTCATATCACTGCTTCTGACAGTGGGGCAAGGTCCAATCTCAGACATCTGCATCCCCGAACATGTGGCAGCCACGTGGCATCCATGTAGGAAGGAGAAAGAAATGGAGATGAACAAAGAGATGGAAAAATCAGTGGAACATTGGGATACTAATGGCCGGAGACTCCTCGACCTCGCCGGAATTGGTGGAAGTTTCCGGCGAAAGTTGGCCGCAGCCGGAGGAGCCGACAAGTGTGCCGCCAAGGGTCAAGTGTCATTTATTTCTGCAGAAGGAATTCATCAGCTTCATATCTTCATCTTTGTGTTGGCTGTTTTCCATGTTCTCTACTGTGTTCTAACTTATGCTTTTGCTAGAGCAAAGATGAGGAGTTGGAAAACCTGGGAAAAGGAAACCAAAACCGCAGAATACCAGTTCTCACACGATCCTGAGAGATTCAGATTTGCAAGAGACACTTCGTTTGGGAGAAGACACTTGAGCTTCTGGACCAAGAATCCGTTTCTTATGTGGATAGTTTGTTTCTTCAGGCAGTTTGTAAGATCAGTTCCAAAAGTTGATTATTTGACATTGAGACATGGGTTTATAATGGCACATTTGGCACCTCAAAGCCATACGCAATTTGACTTCCAAAAATATATTAATCGCTCCCTTGAGGAGGACTTCAAAGTTGTTGTAGGAATCAGCCCACCAATATGGTTCTTCGCTGTGCTGTTTCTCCTCTCAAACACTCACGGGACGAAGTTGCAGGTGATAATAACGAAGATGGCGCTGAGAATACAGGAGAGAGGGGAAGTGGTGAAGGGAGTGCCGGTGGTGGAGCCTGGCGATGACCTTTTCTGGTTCAATCGCCCTCGCCTTGTTCTTTATCTCATCAACTTTGTTCTCTTTCAAAATGCCTTTCAAGTTGCCTTCTTTGCTTGGACTTGGTATGAGTTCGGGTTGAGTTCTTGCTTCCATGAGCATATAGAGGATGTGGTGATCAGAATCTCAATGGGGGTGATTGTACAAATCCTTTGCAGTTATGTTACTCTACCTCTTTATGCACTGGTTACTCAGATGGGTTCAACAATGAAGCCAACTATATTCAATGAGAGGGTGGCAGCAGCCCTTCGCAATTGGTACCATTCGGCTCGGAAGCACATCAAACACAATCGCGGTTCGATCACCCCGATGTCGAGCCGACCCACCACTCCCACTCACCACATGTCACCGGTCCACCTTCTCCGCCATCACAAGAGTGAACTCGATAGCTTCCACACATCTCCAAGAAGGTCGACACTTGACACTGATCGTTGGGATAATGATTCGCCGTCCCCGTCCCATCATGTTGATGGTTCGTCTTCGTCACAACCCCACATCGAGATGGGAGCCTATGAAAGAGATTCAAATGAACCAGGTTCGGTTCAAATTGACCCGGTTCAGCAGCCACGAACCCGCACTCAGCATACGATTGATATTGGCACCAAAGACTTTTCCTTTGATAGAGTTGAATGA 1866 48.07 MLKSTSRTMGSKRERVFEGDPGLNQVKPGWPGAPGTEAEGLGPREWAECSLHIEFGSSSMAAAGSGKSLEQTPTWAVAVVCFVLLLISIVIEFSIHLIGKWFKKRHKRALFEALEKIKSELMLLGFISLLLTVGQGPISDICIPEHVAATWHPCRKEKEMEMNKEMEKSVEHWDTNGRRLLDLAGIGGSFRRKLAAAGGADKCAAKGQVSFISAEGIHQLHIFIFVLAVFHVLYCVLTYAFARAKMRSWKTWEKETKTAEYQFSHDPERFRFARDTSFGRRHLSFWTKNPFLMWIVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHTQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLVLYLINFVLFQNAFQVAFFAWTWYEFGLSSCFHEHIEDVVIRISMGVIVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAAALRNWYHSARKHIKHNRGSITPMSSRPTTPTHHMSPVHLLRHHKSELDSFHTSPRRSTLDTDRWDNDSPSPSHHVDGSSSSQPHIEMGAYERDSNEPGSVQIDPVQQPRTRTQHTIDIGTKDFSFDRVE 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4760616 4767938 - Maker00032768 Lcy11g0297 646198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0297 621 MobiDBLite consensus disorder prediction 1 21 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 539 621 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 539 562 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 563 577 - -
Lcy11g0297 621 MobiDBLite consensus disorder prediction 591 611 - -
Lcy11g0297 621 PANTHER MLO-LIKE PROTEIN 1 62 566 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy11g0297 621 Pfam Mlo family 67 369 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy11g0297 621 Pfam Mlo family 369 535 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0297 Lcy-Chr11:4760616 Lcy8g1891 Lcy-Chr8:45201927 3.25E-209 dispersed
Lcy11g0297 Lcy-Chr11:4760616 Lcy11g0298 Lcy-Chr11:4832009 2.69E-147 tandem
Lcy10g1948 Lcy-Chr10:43531013 Lcy11g0297 Lcy-Chr11:4760616 2.00E-83 transposed
Lcy13g0561 Lcy-Chr13:7109589 Lcy11g0297 Lcy-Chr11:4760616 4.99E-76 transposed
Lcy6g0576 Lcy-Chr6:5470583 Lcy11g0297 Lcy-Chr11:4760616 2.32E-79 transposed
Lcy11g0297 Lcy-Chr11:4760616 Lcy8g0111 Lcy-Chr8:2592769 1.12E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0297 K08472 - csv:101217225 993.416