Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy11g0308 ATGCCTATACAGTGGATTAGTTTTATTCAGAAATTTGACTTCTTGATTAAACATAAGGCTAGAGTTGCAGATAGGGTGGCAGATGCCCTTAGCTGCAAGCATGCCTTGTGTCTTAGCAAGGACCAAGGAAGACCTTTTGTCCTTAAAATAGATCAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGGATCCTAAAGACTATAATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAGTATGACATTCGCTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAAAGAGGATGGTGAAGATAGTGATAGAGACTGGAAGTTGGACCAAAATGCAGACTTTGATTCAGATGGAGATGTGGAATATGAAGAAGAGAGAGCACAAATTATACAATCTCGAATCTGCTCAAGCACAACCCATGAATTGGCTGCGAATTCAAGGGAAGGACGATTTCGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCAGAGCTTATAAGATGCCACAAACAGACTGAACTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATCGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGACATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGTATCACCAGAAAATATATACAGGGTTATATATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAAGAATTGTCAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAACCAGTCAGTTCTATACAATATTTTTGATTGGCCTAGAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAACACCATGGACCTTCCTGAGAAGTTGCTTCCTCAGATTTCAAGCCGAATGGGTATCAAAAGGCTTTGTTTTGGCCCCTATAACCATCAGCAACTTCAAGAAATCATTTTGAGTCGCCTCGAAGGAATTGACGCATTTGAAAAACAAGCTGTTGAATTTGCATCAAGAAAGGTTGCTGCTAATTCAGGAGACGCACGTCGTGCTTTGGGGATATGTATGTGTGCAGCTGAAATTAAGGATTATCAAATAAAGAAGCTGAGTTTGACTTCCAACAACGATATGAAAGCAAAAACACGTATAGGAATATCAGAGGTGGAAGCAGCAATTCAAGAAATGTTTGAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCATAGTAAGATCTTCTTGACAGCTATGGTGGACGAACTTTATAAAACTGGAATGGGTGAAACAACCTTTGGAAAGGTTGCCGAGACTGTCTTGTATCTTTGTACAAACAATGGAGAGGAATTTCCTGGATATGATGCACTCCTCAGAGTTGGTTGTTGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGAAGCTAAATACCGATTTCAGAAGTTACAACTTAATTTTCCAAGTGACGACGTCTCATTTGCACTGAAAGGCAGTAAGGATCTACCTTGGTTGGCTAAGTATCTATGA 1719 40.08 MPIQWISFIQKFDFLIKHKARVADRVADALSCKHALCLSKDQGRPFVLKIDQMESLLRLCQVMDPKDYNNAKEGDDIFLCEYEYDIRWHSFKRLAEIDKEDGEDSDRDWKLDQNADFDSDGDVEYEEERAQIIQSRICSSTTHELAANSREGRFRGLQKIGAKKIPELIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGHIRPHCFVEVNGLKLVSPENIYRVIYEALTGHRVNWKKALQLLTKRFSDVKNCQEDDRPCILLIDELDLLVTRNQSVLYNIFDWPRKPQAKLIVIGIANTMDLPEKLLPQISSRMGIKRLCFGPYNHQQLQEIILSRLEGIDAFEKQAVEFASRKVAANSGDARRALGICMCAAEIKDYQIKKLSLTSNNDMKAKTRIGISEVEAAIQEMFEAPHIQVMKSCSKHSKIFLTAMVDELYKTGMGETTFGKVAETVLYLCTNNGEEFPGYDALLRVGCWLGECRIILCESEAKYRFQKLQLNFPSDDVSFALKGSKDLPWLAKYL 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5002133 5011121 - Maker00032670 Lcy11g0308 646209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy11g0308 572 Gene3D - 46 168 IPR043151 -
Lcy11g0308 572 Gene3D - 369 458 - -
Lcy11g0308 572 Pfam Cdc6/ORC-like, ATPase lid domain 374 426 IPR054425 -
Lcy11g0308 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 429 IPR027417 -
Lcy11g0308 572 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 44 568 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Lcy11g0308 572 Pfam CDC6, C terminal winged helix domain 467 558 IPR015163 -
Lcy11g0308 572 Gene3D - 173 368 IPR027417 -
Lcy11g0308 572 Pfam ATPase family associated with various cellular activities (AAA) 222 366 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy11g0308 572 SMART AAA_5 217 370 IPR003593 GO:0016887(InterPro)
Lcy11g0308 572 FunFam Origin recognition complex subunit 1 174 372 - -
Lcy11g0308 572 FunFam Origin recognition complex subunit 1 369 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0308 Lcy-Chr11:5002133 Lcy6g1462 Lcy-Chr6:22415358 0 dispersed
Lcy11g0308 Lcy-Chr11:5002133 Lcy13g0853 Lcy-Chr13:14800366 2.14E-259 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy11g0308 K02603 - csv:101214082 869.381